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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtttgtgtgtgtgtgtgttggtttgaattgaaccgtgttgtgttaaatttggaatgagagtgataattgtgttttggtgagtaatcagtgagaatttggaatgacagcacaatccgtttttgaaaatagGTGAAAGGAAGGCTTGAAGGTGGACAGTTGTATACTCCTGCCTATGTGGCTCGTGTTGGTGCCATGGTTCGTGGTGCTGTGCGGGGCATCACCGTTCCCA

Basic information

species Glycine max
transcript GLYMA12G07980.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G07980.1 (Glycine max), 3'ss of exon 2
lower sequence: AT3G46220.3 (Arabidopsis thaliana), 3'ss of exon 2
gtgagtttgtgtgtgtgtgtgttggtttgaattgaaccgtgttgtgttaaatttggaatgagagtgataattgtgttttggtga--gtaatcagtgagaatt-tggaatgacagcacaatccgtttttgaaaatagGTGAAAGGAAGGCTTGAAGGTGGACAGTTGTATACTCCTGCCTATGTGGCTCGTGTTGGTGCCATGGTTCGTGGTGCTGTGCGGGGCATCACCGTTCCCA
                             |||||  |  | |  | || |  ||   |           |||||||||  ||||  || | |  | | | || |||| |       |||||  |||       ||||||||||  ||||| |||||||||||||| ||||| ||||| ||||| |  |||||    || |||||||| ||||||    |||| ||    |||||  
---------------------------gtaattgtgct-tctcctcttgagctttcca----------gattgtgtttaagtgaatgtgaacttttatatttatggatttttttttcaatcttttt-------tagGTGAAAGCTAGGCTAGAAGGTGGACAGTTATATACACCTGCTTATGTAGAACGTGTGACCGCTATGGTTCGAGGTGCTTCCAGGGGTATATTTGTTCCTT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254332415|gb|GR843892.1|GR843892
EST:     TAGGTTTGGACTTGGTTTCCTCCGTGTTGGAGCCGCGCCTTGGAACAATT                         GTGAAAGGAAGGCTTGAAGGTGGACAGTTGTATACTCCTGCCTATGTGGCT
genomic: TAGGTTTGGACTTGGTTTCCTCCGTGTTGGAGCCGCGCCTTGGAACAATTgtgagtttgt ... ttgaaaatagGTGAAAGGAAGGCTTGAAGGTGGACAGTTGTATACTCCTGCCTATGTGGCT
EST: gi|27427560|gb|CA939080.1|CA939080
EST:     TAGGTTTGGACTTGGTTTCCTCCGTGTTGGAGCCGCGCCTTGGAACAATT                         GTGAAAGGAAGGCTTGAA
genomic: TAGGTTTGGACTTGGTTTCCTCCGTGTTGGAGCCGCGCCTTGGAACAATTgtgagtttgt ... ttgaaaatagGTGAAAGGAAGGCTTGAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tggtgagtaatcagtgagaatttggaatgacagcacaatccgtttttgaaaatagGTGAAAGGAAGGCTTGAAGGTGGACAGTTGTATACTCCTGCCTATGTGGCTCGTGTTGGTGCCATGGTTCGTGGTGCTGTGCGGGGCATCACCGTTCCCA
                                      tccgttttt  CT-rich tract
                                          tttttgaaaata  TA-rich tract