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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacgctctctctctgcttcgcttctttcgcctattaggtttccgcgttcgtaattttattttcaatgaatttgattgaattcgatagtcgattgtgtttccgtgcttcgtttactatgttgtgctgattcttagtcgaacgtttattaatgcgatcgtgcatgctgttagGATCAGCTGAGGAACGAGATGGTGGCGGAGGTGAAGAAATTAGGGCGCATTTCTTTGATCGATCTCGCTGACGCTACTGGAGTTGACTTGTACTACGTGG

Basic information

species Glycine max
transcript GLYMA12G07980.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|27427560|gb|CA939080.1|CA939080
EST:     TCGATTTCGAGCTTCTCCACACTGTCTCCGGCAAAGAATATATCACTCTC                         GATCAGCTGAGGAACGAGATGGTGGCGGAGGTGAAGAAATTAGGGCGCATT
genomic: TCGATTTCGAGCTTCTCCACACTGTCTCCGGCAAAGAATATATCACTCTCgtacgctctc ... atgctgttagGATCAGCTGAGGAACGAGATGGTGGCGGAGGTGAAGAAATTAGGGCGCATT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atgttgtgctgattcttagtcgaacgtttattaatgcgatcgtgcatgctgttagGATCAGCTGAGGAACGAGATGGTGGCGGAGGTGAAGAAATTAGGGCGCATTTCTTTGATCGATCTCGCTGACGCTACTGGAGTTGACTTGTACTACGTGG
                            tattaat  putative branch site (score: 2)
                          tttattaat  TA-rich tract