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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGTTGACAGCTCAAGTTTCTGCTGAGACTGACCCTGTATCGCTTCTTCCAAAAGTTGTGTCTTTACTTTATATCCAGgtagctacagtctttcttttttttttgctcccacctccctttttccattataaacatggatacttgtatgaatag

Basic information

species Glycine max
transcript GLYMA12G07980.1
intron # 16
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G07980.1 (Glycine max), 5'ss of exon 16
lower sequence: Vv06s0004g03970.t01 (Vitis vinifera), 5'ss of exon 17
GAGTTGACAGCTCAAGTTTCTGCTGAGACTGACCCTGTATCGCTTCTTCCAAAAGTTGTGTCTTTACTTTATATCCAGgt-agcta-----cagtctttctttttt----ttttgc----tcccacctccctttttccattataaacatggatacttgtatgaatag
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GATTTGACATCTCAAGTGTCTGCTGAAAGTGACCCTGTTTCCCTTCTACCAAAAGTTGTTTCTCTGCTTTATGTACAGgtcagttagtacatattactgcatgtttgaatcttcaccatttttctttttccttttccttttctgagcatggattttcttgctcatag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|13481458|gb|BG510801.1|BG510801
EST:     CTGACCCTGTATCGCTTCTTCCAAAAGTTGTGTCTTTACTTTATATCCAG                         GTTTACCACAAAGCACTTCAAGCTCCTGGAAGGGCCATTTCTGTTGCTATT
genomic: CTGACCCTGTATCGCTTCTTCCAAAAGTTGTGTCTTTACTTTATATCCAGgtagctacag ... gtatgaatagGTTTACCACAAAGCACTTCAAGCTCCTGGAAGGGCCATTTCTGTTGCTATT
EST: gi|4260288|gb|AI416784.1|AI416784
EST:     CTGACCCTGTATCGCTTCTTCCAAAAGTTGTGTCTTTACTTTATATCCAG                         GTTTACCACAAAGCACTTCAAGCTCCTGGAAGGGCCATTTCTGTTGCTATT
genomic: CTGACCCTGTATCGCTTCTTCCAAAAGTTGTGTCTTTACTTTATATCCAGgtagctacag ... gtatgaatagGTTTACCACAAAGCACTTCAAGCTCCTGGAAGGGCCATTTCTGTTGCTATT
EST: gi|51342353|gb|CO983434.1|CO983434
EST:     CTGACCCTGTATCGCTTCTTCCAAAAGTTGTGTCTTTACTTTATATCCAG                         GTTTACCACAAAGCACTTCAAGCTCCTGGAAGGGCCATTTCTGTTGCTATT
genomic: CTGACCCTGTATCGCTTCTTCCAAAAGTTGTGTCTTTACTTTATATCCAGgtagctacag ... gtatgaatagGTTTACCACAAAGCACTTCAAGCTCCTGGAAGGGCCATTTCTGTTGCTATT