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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCATGTCAAATGTATCAGCGATCTGCCGACATGGGCCTGGGTGTCCCATTTAATATTGCATCTTATGCACTCCTGACATGCATGATCGCTCATGTTTGTGgtatgcaaattatgccagctttgctagacttaaatttgtactcagacgcacataccatcttaaatccgactttcatgggttcaatagagatttctcattgtttgattgtagggaaatacagcttttatataaaaggaaaattgacattagatattggactgatcaatccatctgtcatatcctgtttttgtcag

Basic information

species Glycine max
transcript GLYMA12G04480.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G04480.1 (Glycine max), 5'ss of exon 9
lower sequence: LOC_Os11g29390.1 (Oryza sativa), 5'ss of exon 9
TCATGTCAAATGTATCAGCGATCTGCCGACATGGGCCTGGGTGTCCCATTTAATATTGCATCTTATGCACTCCTGACATGCATGATCGCTCATGTTTGTGgtatgcaaattatgccagctttgctagacttaaatttgtactcagacgcacataccatcttaaatccgactttcatgggttcaatagagatttctcattgtttgattgtagggaaatacagcttttatataaaaggaaaattgacattagatattggactgatcaatccatctgtcatatcctgtttttgtcag
|| || || |||||||| || ||||| || ||||| || ||||| ||||| || |||||||| ||| | || ||||||| |||||| ||||||||||| ||||||  |  |    |  |  |||||    | | |   || ||  |      || | |  |  ||      |||| | ||   |  |    || |   ||||  ||                                                                                        
TCGTGCCAGATGTATCAACGCTCTGCTGATATGGGACTTGGTGTTCCATTCAACATTGCATCATATTCTCTTCTGACATACATGATTGCTCATGTTTGCGgtatgttatct---tctaccctgctatg--tgactggataatcccaaaggtctaaccttattgatgtattgttca-gcgtaagactgtttgttgttgatgttgtat----------------------------------------------------------------------------------------

upper sequence: GLYMA12G04480.1 (Glycine max), 5'ss of exon 9
lower sequence: Vv03s0038g04500.t01 (Vitis vinifera), 5'ss of exon 10
TCATGTCAAATGTATCAGCGATCTGCCGACATGGGCCTGGGTGTCCCATTTAATATTGCATCTTATGCACTCCTGACATGCATGATCGCTCATGTTTGTGgtatgcaaattatgccagctttgctagacttaa--atttgtactcagacgcacataccatcttaaatccgactttcatgggttcaatagagatttctcattgtttgattgtagggaaatacagcttttatataaaaggaaaattgacattagatattggactgatcaatccatctgtcatatcctgtttttgtcag
||||| |||||||| ||||||||||| |||||||| || ||||| || ||||| |||||||||||||| ||| | ||||||||||||||||||||||||||||||||  || || ||  |     | || |||  | || |  ||| | ||| ||    |   |  |   | | ||  |   |  || |  |  | |     |                                                                                             
TCATGCCAAATGTACCAGCGATCTGCTGACATGGGTCTTGGTGTGCCGTTTAACATTGCATCTTATGCGCTCTTAACATGCATGATCGCTCATGTTTGTGgtatgcat-ttgtgacaaatccag-aaacctaaccagttttgttcacatgcaaatttgctagaacgtttaaatatctaga--tagatgggtacatgtaggcatc--------------------------------------------------------------------------------------------

upper sequence: GLYMA12G04480.1 (Glycine max), 5'ss of exon 9
lower sequence: Vv18s0001g12940.t01 (Vitis vinifera), 5'ss of exon 8
TCATGTCAAATGTATCAGCGATCTGCCGACATGGGCCTGGGTGTCCCATTTAATATTGCATCTTATGCACTCCTGACATGCATGATCGCTCATGTTTGTGgtatgcaaattatgccagctttgctagacttaaatttgtactcagacgcacataccatcttaaatccgactttcatgggttcaatagagatttctcattgtttgattgtagggaaatac--agcttttatataaaaggaaaattgacattagat--attggactgatcaatccatctgtcatatcctgtttttgtcag
|| ||||||||||||||||| ||||| || ||||| || ||||| |||||||| ||||| ||||||||  |  ||||||||||||| |||||||||||||||||| |  ||||  |  || ||  |   | ||  ||  |   |   | |  ||   |  ||| | |    | ||| | |  | |  |  | | || | |  |     |   ||  ||   | | | || |       |||| |  |  || ||  ||| | |||  ||                             
TCCTGTCAAATGTATCAGCGCTCTGCTGATATGGGTCTTGGTGTGCCATTTAACATTGCTTCTTATGCTTTATTGACATGCATGATTGCTCATGTTTGTGgtatgtat-ttatttctactatgagaatgtaaacctttgaaataagaggatcta--gttataatttc----tccatagttctatttcatttctgtcctggcattggcatcatgagttatcaatcatctacacccttttaaaaatccctctacattaatttgcctgtacag----------------------------