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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtggatgtgcctttatctttgtaagtcattaggctgcatttcgtaggattgctcagctctgtatttctcatctacattttacagGTATACTGACATGCATGCTGACTACTCTGGCCAAGGATTTGATCAGCTTTTAGATGTTATTAACAAGATAAAGCATAATCCCAATGATCGAAGGATCATT

Basic information

species Glycine max
transcript GLYMA12G04480.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G04480.1 (Glycine max), 3'ss of exon 7
lower sequence: LOC_Os12g26060.1 (Oryza sativa), 3'ss of exon 5
----------gtaagtggatgtgcctttatctttgtaagtcattag--gctgcatttcgtaggattgctcagctctgtatttctcatctacattttacagGTATACTGACATGCATGCTGACTACTCTGGCCAAGGATTTGATCAGCTTTTAGATGTTATTAACAAGATAAAGCATAATCCCAATGATCGAAGGATCATT
           |   |   | |  || | ||| | |   ||  ||    ||  | ||  |     ||   || |    |||||      | |||||  || ||||||||||||||||||||||||   ||  |||| ||||||||| |  | ||||| ||| ||||||| ||| |||||||| ||||| |||| ||||||
actttgaaactttcctctctctctctctctctctctctctccatatttccttaactttatctatctgactagattctaatttccgtgaaatattttgtagATATACTGACATGCATGCTGACTACGTGGGAAAAGGTTTTGATCAGTTAATGGATGTCATTGACAAGATCAAGAATAATCCCGATGATAGAAGAATCATT

upper sequence: GLYMA12G04480.1 (Glycine max), 3'ss of exon 7
lower sequence: LOC_Os11g29390.1 (Oryza sativa), 3'ss of exon 7
gtaagtggat-----gtgcctttatctttgtaagt-cattaggctgcatttcgtaggattgctcagctctgtatttctcatctacattttacagGTATACTGACATGCATGCTGACTACTCTGGCCAAGGATTTGATCAGCTTTTAGATGTTATTAACAAGATAAAGCATAATCCCAATGATCGAAGGATCATT
||||||   |     |  |||  ||   | |   |  |  |  ||   | ||     |   |||       ||      | |||  | | |||| ||||| |||||||||||||||||  ||||  |||| |||||||||||  | ||||| ||| ||||||| ||| |||||||  | ||| |  | || || 
gtaagtttttctctcgcccctacatacctatcgatgtaccaatctatctgtccatctaggtctctaaggactaaggactaactatttgtaacagATATACCGACATGCATGCTGACTATACTGGTAAAGGCTTTGATCAGCTAATGGATGTGATTGACAAGATCAAGAATAATCCTGACGATAGGCGAATTATC

upper sequence: GLYMA12G04480.1 (Glycine max), 3'ss of exon 7
lower sequence: GRMZM2G139880_T01 (Zea mays), 3'ss of exon 6
gtaagtggatgtgcctttatctttgtaagtcattaggctgcatttcgtaggattgctcagctctgtatttctcatctacatttt--acagGTATACTGACATGCATGCTGACTACTCTGGCCAAGGATTTGATCAGCTTTTAGATGTTATTAACAAGATAAAGCATAATCCCAATGATCGAAGGATCATT
          ||    |||  ||  |   || ||  |||| || |  |    ||| |||  | |     |    |  |||| |   |||| |||||||||||||||||||||||  ||||  |||| |||||||||||  | ||||| ||| ||||||| ||| | |||||  |||| ||  | || |||
----------gtaagcttacattcctt--tccttgagctgtatcttttttc-ttgttcatgttttctgataaagttgacatatctgacagATATACTGACATGCATGCTGACTATACTGGAAAAGGCTTTGATCAGCTAATGGATGTGATTGACAAGATTAAGAACAATCCTGATGACCGCCGAATAATT

upper sequence: GLYMA12G04480.1 (Glycine max), 3'ss of exon 7
lower sequence: AT2G16370.1 (Arabidopsis thaliana), 3'ss of exon 7
gtaagtggatgtgcctttatctttgtaagtcattaggctgcatttcgtaggattgctcagctctgtatttctcatctacattttacagGTATACTGACATGCATGCTGACTACTCTGGCCAAGGATTTGATCAGCTTTTAGATGTTATTAACAAGATAAAGCATAATCCCAATGATCGAAGGATCATT
|| |||   | | |  |     |  |   |  ||   ||   || ||  |||||  |         |  |||        ||||||||||| || || ||||||||||| ||  |||| |||||||||||||| ||| ||||||| ||| |||| || ||| | |||||  |||||||  | || || 
gtcagtaacttttcaatgcatatgttggttttttcttctctgttccgatggatttgttttggtgaaacatctttctcttgttttacagGTACACAGATATGCATGCTGATTATACTGGTCAAGGATTTGATCAACTTGTAGATGTAATTGACAAAATCAAGAACAATCCTGATGATCGGCGTATTATA

upper sequence: GLYMA12G04480.1 (Glycine max), 3'ss of exon 7
lower sequence: AT4G34570.1 (Arabidopsis thaliana), 3'ss of exon 9
gtaagtggatgtgcctttatct-ttgtaagtcattaggctgcatttcgtaggattgctcagctctg---tatttctcatctacattttacagGTATACTGACATGCATGCTGACTACTCTGGCCAAGGATTTGATCAGCTTTTAGATGTTATTAACAAGATAAAGCATAATCCCAATGATCGAAGGATCATT
|| ||| | |   |  |||||| |||  | |   |  | |           |||| ||  |    |   | ||  |||||| |  | |||||||| || || ||||||||||| ||  |||||||||||||||||||||| |||||||| ||||||||||| ||| | |||||  |||||||| |||| || 
gtcagtagcttctctcttatctcttgacactttctgagttttggcaaaacagatttctgtgtcgagacattttgttcatct-ctctctacagGTACACAGATATGCATGCTGATTATACTGGCCAAGGATTTGATCAGCTCTTAGATGTAATTAACAAGATCAAGAACAATCCTGATGATCGACGGATTATA

upper sequence: GLYMA12G04480.1 (Glycine max), 3'ss of exon 7
lower sequence: Vv03s0038g04500.t01 (Vitis vinifera), 3'ss of exon 8
--------------------gtaagtggatgtgc----ctttatctttgt-aagtcattaggctgcatttc----gtaggattgctcagctctgtatttctcatc--tacattttacagGTATACTGACATGCATGCTGACTACTCTGGCCAAGGATTTGATCAGCTTTTAGATGTTATTAACAAGATAAAGCATAATCCCAATGATCGAAGGATCATT
                    | ||||  |||||     || ||| ||| |  ||| |  |  |||  ||      ||||  || |||   | |  |  | |      || ||||||||| |||| ||||||||||||||||||  |||||||||||||||||||| | |||||||||||||||||||| ||| ||||||| ||||||||| |||| || 
gttcgtggattttattctttgaaagtttatgtggtggactctatttttctcgagtaaggattctgttttctcgaggtagtttttctccagttttaacctattgctcatatattttacagCTATATTGACATGCATGCTGACTATACTGGCCAAGGATTTGATCAGTTGTTAGATGTTATTAACAAGATCAAGAATAATCCGAATGATCGACGGATTATC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taggctgcatttcgtaggattgctcagctctgtatttctcatctacattttacagGTATACTGACATGCATGCTGACTACTCTGGCCAAGGATTTGATCAGCTTTTAGATGTTATTAACAAGATAAAGCATAATCCCAATGATCGAAGGATCATT
                                           tacatttta  TA-rich tract