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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtccgcagctatatttgggtttctctttggaagagctctctctttttctctcatgaagttttgtcaacttccttttattgttttttccctgtagTTCTATGTAGCTAATGGGGAGCTATCATGTCAAATGTATCAGCGATCTGCCGACATGGGCCTGGGTGTCCCATTTAATATTGCATCTTATGCACTCCTGA

Basic information

species Glycine max
transcript GLYMA12G04480.1
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G04480.1 (Glycine max), 3'ss of exon 8
lower sequence: GRMZM2G005990_T01 (Zea mays), 3'ss of exon 8
-------------------------------------------------------------------------gtccgcagctatatttgggt--ttctctttggaagagctctctctttttctctcatgaagttttgtcaact---------tccttttattgttttttccctgtagTTCTATGTAGCTAATGGGGAGCTATCATGTCAAATGTATCAGCGATCTGCCGACATGGGCCTGGGTGTCCCATTTAATATTGCATCTTATGCACTCCTGA
                                                                           |   || | | | | | |  || | |||  || |   ||  | |||| | |       |||||||||||         | | || |   | |   || |  |||||||||| |  |||||||||||||| || || |||||||| || ||||| |||||||| || ||||| ||||| || || ||||| ||| | |||||||
gtcagtataatctgtcagcttggtttaagttgaaattagtttttttttacttttaaattacagtagactggtgaacataagttttttcttgataattatgtttttaacattgcttgcattttatttttgatctttttgtcaactaaaaacatttgcattcaacctatccaccttccagTTCTATGTGGAAAATGGGGAGCTATCTTGCCAGATGTATCAACGCTCTGCAGACATGGGGCTTGGTGTTCCATTCAACATCGCATCATATTCTCTCCTGA

upper sequence: GLYMA12G04480.1 (Glycine max), 3'ss of exon 8
lower sequence: AT2G16370.1 (Arabidopsis thaliana), 3'ss of exon 8
gtccgcagctatatttgggtttctctttggaagagctctctctttttctctcatgaagttttgtcaacttccttttattgttttttccctgtagTTCTATGTAGCTAATGGGGAGCTATCATGTCAAATGTATCAGCGATCTGCCGACATGGGCCTGGGTGTCCCATTTAATATTGCATCTTATGCACTCCTGA
              |   |   || | |     |  ||| | | ||||||  |  | |  |  |  | | | ||||    ||||||   || |||| ||||| ||  | ||||| || |||||||||||||||||||| || || || |||||||| ||||| || ||||| ||||| |||||  | || || |
-------------gtaatgccactttatcttctaattctgt-tgtttctcctacaatgagt--ttgattacttttt----ttttttttttgcagTTTTATGTGGCAGAAGGGGAACTCTCATGTCAAATGTATCAGCGTTCAGCAGATATGGGCCTTGGTGTGCCGTTTAACATTGCTTCTTACTCTCTTCTTA

upper sequence: GLYMA12G04480.1 (Glycine max), 3'ss of exon 8
lower sequence: Vv03s0038g04500.t01 (Vitis vinifera), 3'ss of exon 9
gtccgcagctatatttgggtttctctttggaagagctctctctttttctctcatgaa--gttttgtcaacttccttttattgttttttccctgtagTTCTATGTAGCTAATGGGGAGCTATCATGTCAAATGTATCAGCGATCTGCCGACATGGGCCTGGGTGTCCCATTTAATATTGCATCTTATGCACTCCTGA
                  |||  | ||     |   | | | | ||||  | || |    | |  |  | | | ||||    |||| | | || |||||||||||    |||||||| ||||||| |||||||| ||||||||||| |||||||| || ||||| || ||||| |||||||||||||| ||| | |
------------------gttagtattaaagtggcttatttatatttcctttatcatttatgtctttgattacatttttcctttttcttcttgcagTTCTATGTAAGCCATGGGGAGTTATCATGCCAAATGTACCAGCGATCTGCTGACATGGGTCTTGGTGTGCCGTTTAACATTGCATCTTATGCGCTCTTAA

upper sequence: GLYMA12G04480.1 (Glycine max), 3'ss of exon 8
lower sequence: Vv18s0001g12940.t01 (Vitis vinifera), 3'ss of exon 7
gtccgcagctatatttgggtttctctttggaagagctctctctttttctctcatgaagttttgtcaacttccttttattgttttttccctgtagTTCTATGTAGCTAATGGGGAGCTATCATGTCAAATGTATCAGCGATCTGCCGACATGGGCCTGGGTGTCCCATTTAATATTGCATCTTATGCACTCCTGA
||  | | | ||  |    | ||| | |        ||    |||| |  |  | || |    |     |  |||   | ||| | |  || |||| |||||||| |||||||||||||| ||||||||||||||||| ||||| || ||||| || ||||| |||||||| ||||| ||||||||  |  |||
gtttggaac-atgct-aattctctttatcatttttttcctcattttacggtagtaaaatgcaatgtttcttatttgcgtatttctacattgcagTTTTATGTAGCCAATGGGGAGCTATCCTGTCAAATGTATCAGCGCTCTGCTGATATGGGTCTTGGTGTGCCATTTAACATTGCTTCTTATGCTTTATTGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctctttttctctcatgaagttttgtcaacttccttttattgttttttccctgtagTTCTATGTAGCTAATGGGGAGCTATCATGTCAAATGTATCAGCGATCTGCCGACATGGGCCTGGGTGTCCCATTTAATATTGCATCTTATGCACTCCTGA
                        tcaacttccttttatt  CT-rich tract
                                 ttttattgtttttt  TA-rich tract