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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatatttatatttttgtaaccttccttcttttttctctctgcttctctccttttgtaatcatattaagctctttcactgttgtagctgatgacaattttcatgtacagAGAGGCTCTTAATGCACCTGGATGTGAAGCTGCCCATATTACAGAAATTGAGGCAAGCATTGAGTGTGACACTTTTATGCCTCGAGTTGATACCAATGTA

Basic information

species Glycine max
transcript GLYMA12G04480.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G04480.1 (Glycine max), 3'ss of exon 2
lower sequence: Vv03s0038g04500.t01 (Vitis vinifera), 3'ss of exon 3
gtatatttatatttttgtaaccttccttcttttttctctctgcttctctcctt-ttgtaatcatattaagctctttcactgttgtagctgatgacaattttcatgtacagAGAGGCTCTTAATGCACCTGGATGTGAAGCTGCCCATATTACAGAAATTGAGGCAAGCATTGAGTGTGACACTTTTATGCCTCGAGTTGATACCAATGTA
                                    | | | |||   |  |  |||   |  ||   |||| ||||  | ||  || |||| |   ||||||  ||||| || ||||| ||||||||||||||||| |||  ||| ||||||||||||||| ||||| | || ||||||||||| || |||    ||||| ||   |||
-----------------------------------gtgtgtactttgttgatcattgctgtattaaggagctttttcgttctttcagttgattatc-ttttca-atacagGGAAGCTCTCAATGCACCTGGATGTGATGCTATCCACATTACAGAAATTGAGACAAGCTTCGAATGTGACACTTTCATCCCTGCTATTGATTCCTTGGTA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtaatcatattaagctctttcactgttgtagctgatgacaattttcatgtacagAGAGGCTCTTAATGCACCTGGATGTGAAGCTGCCCATATTACAGAAATTGAGGCAAGCATTGAGTGTGACACTTTTATGCCTCGAGTTGATACCAATGTA
                              agctgat  putative branch site (score: 4)
                                          ttttcat  putative PPT
     tcatattaa  TA-rich tract