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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATAAAGCATAATCCCAATGATCGAAGGATCATTCTCTCAGCGTGGAATCCATCTGATCTTAAATTGATGGCACTTCCACCCTGCCACATGTTTGCACAGgtccgcagctatatttgggtttctctttggaagagctctctctttttctctcatgaagttttgtcaacttccttttattgttttttccctgtag

Basic information

species Glycine max
transcript GLYMA12G04480.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G04480.1 (Glycine max), 5'ss of exon 8
lower sequence: LOC_Os12g26060.1 (Oryza sativa), 5'ss of exon 6
GATAAAGCATAATCCCAATGATCGAAGGATCATTCTCTCAGCGTGGAATCCATCTGATCTTAAATTGATGGCACTTCCACCCTGCCACATGTTTGCACAGgtccgca--gctatatttgggtttctctttggaagagctctctctttttctctcatgaagttttgtcaacttccttttattgttttttccctgtag-------
||| ||| |||||||| ||||| |||| |||||| | || || ||||||||| | || || |||  |||||| || ||||| |||||||||||||| |||||  |||  |||   | |   ||  || |    | | |||   ||| |   |||   |   |||   || ||  | |||    | ||      |         
GATCAAGAATAATCCCGATGATAGAAGAATCATTTTATCTGCATGGAATCCAACAGACCTGAAAAAGATGGCCCTGCCACCATGCCACATGTTTGCTCAGgttagcatagcttagtcttttttcttcatgtttacatctcaagcttctgtcctctcta---tttaagaatttaatcttaccaatcttcagtaatcacaacctt

upper sequence: GLYMA12G04480.1 (Glycine max), 5'ss of exon 8
lower sequence: AT2G16370.1 (Arabidopsis thaliana), 5'ss of exon 8
GATAAAGCATAATCCCAATGATCGAAGGATCATTCTCTCAGCGTGGAATCCATCTGATCTTAAATTGATGGCACTTCCACCCTGCCACATGTTTGCACAGgtccgcagctatatttgggtttctctttggaagagctctctctttttctctcatgaagttttgtcaacttccttttattgttttttccctgtag
 || ||| | |||||  |||||||  | || ||  | ||||| |||||||| |||||||||||  ||||||||||||| || ||||| ||||||||||| ||    |     | ||    ||||  ||       || |   || | ||   ||||   ||||   ||||  ||||    ||||||  | |   
AATCAAGAACAATCCTGATGATCGGCGTATTATAATGTCAGCTTGGAATCCTTCTGATCTTAAGCTGATGGCACTTCCTCCATGCCATATGTTTGCACAAgt----aatgccactttatcttctaatt-------ctgttgtttctcctacaatgag--tttgattactttttttt----tttttttgcag---

upper sequence: GLYMA12G04480.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv03s0038g04500.t01 (Vitis vinifera), 5'ss of exon 9
GATAAAGCATAATCCCAATGATCGAAGGATCATTCTCTCAGCGTGGAATCCATCTGATCTTAAATTGATGGCACTTCCACCCTGCCACATGTTTGCACAGgtccgcagctatatttgggtttctctttggaagagctctctctttttctctcatgaagttttgtcaacttccttttattgttttttccctgtag
||| ||| ||||||| ||||||||| |||| || |||||||| |||||||| |||||||| |||||||||||||||||||||||||| ||||||||||||||  |      ||||   ||  ||  ||   |      |  |||| ||  | |||     |  |  | | | ||||    |||| | | || ||
GATCAAGAATAATCCGAATGATCGACGGATTATCCTCTCAGCTTGGAATCCTTCTGATCTCAAATTGATGGCACTTCCACCCTGCCATATGTTTGCACAGgttag------tattaaagtggcttatttata-----tttcctttatcatttatg-----tctttgattacatttttcctttttcttcttgcag

upper sequence: GLYMA12G04480.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv18s0001g12940.t01 (Vitis vinifera), 5'ss of exon 7
GATAAAGCATAATCCCAATGATCGAAGGATCATTCTCTCAGCGTGGAATCCATCTGATCTTAAATTGATGGCACTTCCACCCTGCCACATGTTTGCACAGgtccgcagctatatttgggtttctctttggaagagctctctctttttctctcatgaagttttgtcaacttccttttattgttttttccctgtag
||| ||| |||| ||  ||||  |  | || || |||||  | ||||||||||||||||||||||||||||||||||| || ||||||||||||||||| ||  | | | ||  |    | ||| | |        ||    |||| |  |  | || |    |     |  |||   | ||| | |  || ||
GATCAAGAATAAACCTGATGACAGGCGTATTATACTCTCTTCTTGGAATCCATCTGATCTTAAATTGATGGCACTTCCGCCTTGCCACATGTTTGCACAAgtttggaac-atgct-aattctctttatcatttttttcctcattttacggtagtaaaatgcaatgtttcttatttgcgtatttctacattgcag