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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACGAGGAGCCATAGTCACAACCTTCATTGTTTGCTATGCTCTCACATCTTTCATTTCTGGTTATGTGAGTGGGGGAATGTACTCACGTAATGGGGgtaagaatttgcattgatctttgctacatgtttgtttgggtgcttctctctccctctgaatgattataaccgtgcttataattttcag

Basic information

species Glycine max
transcript GLYMA08G20100.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G20100.1 (Glycine max), 5'ss of exon 9
lower sequence: LOC_Os12g07670.1 (Oryza sativa), 5'ss of exon 9
ACGAGGAGCCATAGTCACAACCTTCATTGTTTGCTATGCTCTCACATCTTTCATTTCTGGTTATGTGAGTGGGGGAATGTACTCACGTAATGGGGgtaagaat--------------ttgcattgatctttgctacatgtttgtttgggtgcttctctctccctctgaatgattataaccgtgcttataattttcag
 |||||  | ||  |||||||||||||||| ||||||||||| |||||||| |||||||| ||||| ||||| ||  | |||||| | ||||| |||| |  |              |||||||  | | |  ||  | ||||| || |   |||  ||||      |     | |  |   | ||     | ||| 
GCGAGGGTCTATCATCACAACCTTCATTGTGTGCTATGCTCTTACATCTTTTATTTCTGGCTATGTCAGTGGTGGCCTCTACTCAAGGAATGGTGgtatggttctttccttttggaattgcattattttcttgtat-tatttgtctgtgcaattcaatctcttctcaaggttctgtttcatagtttcctcctgtca-

upper sequence: GLYMA08G20100.1 (Glycine max), 5'ss of exon 9
lower sequence: LOC_Os11g07910.1 (Oryza sativa), 5'ss of exon 9
ACGAGGAGCCATAGTCACAACCTTCATTGTTTGCTATGCTCTCACATCTTTCATTTCTGGTTATGTGAGTGGGGGAATGTACTCACGTAATGGGGgtaagaatttgcat---tgatctttgctac-atgtttgtttgggtgcttctctctccctctgaatgattataaccgtgcttataattttcag----------------------------------------------------
||||||||| ||  |||| |||||||| || ||||| || || ||||||||||||||||| ||||| ||||| ||  | |||||| | ||||| |||| |  | |  ||   |  | |||| |       |||   |  |  ||||     |||   |  ||||||  | ||  | | |  |||||                                                     
ACGAGGAGCTATCATCACGACCTTCATCGTGTGCTACGCCCTTACATCTTTCATTTCTGGATATGTTAGTGGTGGCCTCTACTCAAGGAATGGCGgtatgtttctatatatatagtttttgttgttggacttgcccgttttattctactatcctgaaatagattatt-cagttttgaaatgtttcaatttctgtgtttcttatctactgttcactgaatccatttctgatccatggcag

upper sequence: GLYMA08G20100.1 (Glycine max), 5'ss of exon 9
lower sequence: LOC_Os02g34690.1 (Oryza sativa), 5'ss of exon 9
ACGAGGAGCCATAGTCACAACCTTCATTGTTTGCTATGCTCTCACATCTTTCATTTCTGGTTATGTGAGTGGGGGAATGTACTCACGTAATGGGGgtaagaatttgcattgatctttgctacatgtttgtttgggtgcttctctctccctctgaatgattataaccgtgcttataattttcag------------
 |||||||| || |||||||| ||||||||||| ||||| || || || ||||| ||||| ||||| ||||| | | | || |||||  ||||||||| ||| |    ||  | |     ||||  |||    ||  |    || |    ||  | |||  | |||    ||| |||  |  |            
GCGAGGAGCTATTGTCACAACATTCATTGTTTGTTATGCCCTTACTTCATTCATCTCTGGATATGTCAGTGGTGCACTTTATTCACGGCATGGGGgtatgaactcagtttacttt-----acat-cttgaacaggcacacacctattttactataagatgctcacctcattta-aatccttggtttgctgagcag

upper sequence: GLYMA08G20100.1 (Glycine max), 5'ss of exon 9
lower sequence: GRMZM2G420310_T01 (Zea mays), 5'ss of exon 9
ACGAGGAGCCATAGTCACAACCTTCATTGTTTGCTATGCTCTCACATCTTTCATTTCTGGTTATGTGAGTGGGGGAATGTACTCACGTAATGGGGgtaagaatttgcattgatctttgcta-----catgtttgtttgggtgcttctctctcc-------ctctgaatgattataaccgtgcttataattttcag-
 ||||| || ||  |||||||||||||||| ||||||||||| |||||||| |||||||| ||||| ||||| ||  | |||||| | ||||| |||| |  | ||||    | | |  ||     ||||||||||||     |||  | ||        |||||  |   ||||  |    | ||  | |||   
GCGAGGGGCTATCATCACAACCTTCATTGTGTGCTATGCTCTTACATCTTTTATTTCTGGATATGTTAGTGGTGGTCTTTACTCAAGGAATGGTGgtatggttctgcacaattttctattaattctcatgtttgtttgcacaattcagtttctttgcaatctctgtttccatatagtccc-ttcatggtcttctcc

upper sequence: GLYMA08G20100.1 (Glycine max), 5'ss of exon 9
lower sequence: GRMZM2G165631_T01 (Zea mays), 5'ss of exon 8
ACGAGGAGCCATAGTCACAACCTTCATTGTTTGCTATGCTCTCACATCTTTCATTTCTGGTTATGTGAGTGGGGGAATGTACTCACGTAATGGGGgtaagaatttgcat-tgatctttgctacatgtttgtttgggtgcttctctctccctctgaatgattataaccgtgcttataattttcag
 |||||||| || |||||||| |||||||||||||||||||| || || ||||| ||||| ||||| ||||| | | | ||||||||| |||| |||| |   ||   | | || |    |  |  | | |     |  |||| |      || | |  || |||      ||  |        
GCGAGGAGCTATTGTCACAACATTCATTGTTTGCTATGCTCTTACTTCATTCATCTCTGGATATGTCAGTGGTGCATTATACTCACGTCATGGAGgtatgggcttatttatcatgtaaaattgaactgtatacctatagttctataaggtgctcagttgttttaaatccttttggag-------

upper sequence: GLYMA08G20100.1 (Glycine max), 5'ss of exon 9
lower sequence: GRMZM2G087212_T01 (Zea mays), 5'ss of exon 9
ACGAGGAGCCATAGTCACAACCTTCATTGTTTGCTATGCTCTCACATCTTTCATTTCTGGTTATGTGAGTGGGGGAATGTACTCACGTAATGGGGgtaagaatttgcattgatctttgctacatgtttgtttgggtgcttctctctccctctgaatga---ttataaccgtgcttataattttcag---------
 |||||||| ||  |||||||||||||||| ||||| ||||| ||||||||||| ||||| ||||| ||||| ||  | || ||| | ||||| |||| || | |||||   | | |  |   |  |   |   |      | ||  |   |  |||     ||   ||   | | ||| |   |          
GCGAGGAGCTATCATCACAACCTTCATTGTGTGCTACGCTCTTACATCTTTCATCTCTGGATATGTTAGTGGTGGTCTCTATTCAAGGAATGGTGgtatgattctgcatgtttttctcttctctactatataaagcatcattttccacggttccatgtcctctactcccccacatttaaatggtaaaaaagctaa

upper sequence: GLYMA08G20100.1 (Glycine max), 5'ss of exon 9
lower sequence: GRMZM2G026231_T01 (Zea mays), 5'ss of exon 9
ACGAGGAGCCATAGTCACAACCTTCATTGTTTGCTATGCTCTCACATCTTTCATTTCTGGTTATGTGAGTGGGGGAATGTACTCACGTAATGGGGgtaagaatttg--cattgatctttg--ctacatgtttgtttgggtgcttctctctccctctgaatgattataaccgtg-------cttataattttcag---------------------------------------------------------------------------------------------
 ||||| || ||  |||||||||||||||| ||||||||||| ||||| || |||||||| ||||| ||||| ||  | |||||| | |  || |||| |  | ||  || |  |||||    | |||||||||||| |   |||  | ||  |   |||   | |  || ||        | ||  | |||                                                                                               
GCGAGGGGCTATCATCACAACCTTCATTGTGTGCTATGCTCTTACATCGTTTATTTCTGGATATGTTAGTGGTGGTCTTTACTCAAGGAGCGGTGgtatggttctggacacttttctttaattttcatgtttgtttgcgcaattcagtttctttgc-aatatctctttccttgacgtaccttcatgttcttctatttcaaaaatagtctgcagtttaacttgtcatgtatggaatcctcacctcacaatctatatggcttaccgattgcttcttgaattcatggcag

upper sequence: GLYMA08G20100.1 (Glycine max), 5'ss of exon 9
lower sequence: AT1G10950.1 (Arabidopsis thaliana), 5'ss of exon 9
ACGAGGAGCCATAGTCACAACCTTCATTGTTTGCTATGCTCTCACATCTTTCATTTCTGGTTATGTGAGTGGGGGAATGTACTCACGTAATGGGGgtaagaatttgcattgatctttgctacatgtttgt-ttgggtgcttctctctccctctgaatgattataaccgtgcttataattttcag
  ||||||| || |||||||| ||||| || ||||||||||| || |||||  | |||||||||||||| || |||||||||||| | |  ||||||| ||  || |     |    |   |      || ||   | | |||||  |  |   | | |||  ||   || ||    | |||||
GAGAGGAGCAATCGTCACAACTTTCATAGTGTGCTATGCTCTGACTTCTTTTGTCTCTGGTTATGTGAGCGGTGGAATGTACTCAAGAAGCGGGGgtatga-cttactcgacttggcggacccctccagtgttactttcctctctaactattcaagtaatttaaatgctggtt----tattcag

upper sequence: GLYMA08G20100.1 (Glycine max), 5'ss of exon 9
lower sequence: Vv18s0041g00680.t01 (Vitis vinifera), 5'ss of exon 9
ACGAGGAGCCATAGTCACAACCTTCATTGTTTGCTATGCTCTCACATCTTTCATTTCTGGTTATGTGAGTGGGGGAATGTACTCACGTAATGGGGgtaag-aatttgcattgatctttgctacatgtttgtttgggtgcttctctct---ccctctgaatgat---tataaccgtgcttataattttcag------------------------------------------------------------------------------------------
  ||||||| || ||||| || || || || || |||||||| ||||| |||||||| |||||||||||||| ||||||||||| || ||||| |||||| |||||| |       ||||  ||   ||  |    ||   | | ||        || | ||     ||  || || || | ||| |                                                                                             
GAGAGGAGCAATTGTCACGACTTTTATAGTGTGTTATGCTCTTACATCATTCATTTCGGGTTATGTGAGTGGTGGAATGTACTCCCGCAATGGTGgtaagtaatttgtacattatgttgcctcactcttagtcttctgtcaccccctaaatttcatgtacgaaaggcatggcc-tgtttttgattcttttattgtcaatgaatctcttctataaatggtcatttcctctgtcttatcagcatttgtttactggtggcttattactgtgtctacttgtcag

upper sequence: GLYMA08G20100.1 (Glycine max), 5'ss of exon 9
lower sequence: Vv12s0035g00280.t01 (Vitis vinifera), 5'ss of exon 9
ACGAGGAGCCATAGTCACAACCTTCATTGTTTGCTATGCTCTCACATCTTTCATTTCTGGTTATGTGAGTGGGGGAATGTACTCACGTAATGGGGgtaagaatttgcattgatctttgctacatgtttgt-ttgggtgcttctct----ctccctctgaatgattataaccgtgctta--taattttcag-------------------------------------------------------------------------------------
  ||||||| || |||||||| || || || || |||||||| ||||| |||||||| |||||||||||||| || ||||||||||| ||||| |||| | | ||     |     || |  |||  |   ||   || || |||     ||| ||   ||  ||    |  |  ||   | || || |                                                                                      
GAGAGGAGCAATTGTCACAACTTTTATAGTATGTTATGCTCTGACATCATTCATTTCGGGTTATGTGAGTGGTGGGATGTACTCACGCAATGGTGgtatgtacttcatccgtcaactggtcgatggctaagtttcttgtttttctgggcttccttccatatcttttgtgctttttttgggttatatttaacaagtatttcttgatatgttctactcaactgtctttgtgattgcttctggtgctaaattatatcacttctctgtcatcttgtcag

upper sequence: GLYMA08G20100.1 (Glycine max), 5'ss of exon 9
lower sequence: EFJ15096 (Selaginella moellendorffii), 5'ss of exon 9
ACGAGGAGCCATAGTCACAACCTTCATTGTTTGCTATGCTCTCACATCTTTCATTTCTGGTTATGTGAGTGGGGGAATGTACTCACGTAATGGGGgtaagaatttgcattgatctttgctacatgtttgtttgggtgcttctctctccctctgaatgattataaccgtgcttataattttcag
 || ||||| ||||| |||||||||||||| ||||| ||||| || || ||||| || |||||||| ||||| ||  | ||||| || || |  |||| |         | ||  || |||| |||     ||       ||  | | || || |                            
GCGGGGAGCAATAGTGACAACCTTCATTGTATGCTACGCTCTTACGTCATTCATCTCCGGTTATGTCAGTGGCGGGTTTTACTCGCGAAACGATGgtagg---------taatgctt-ctacctgtggtgctgacaatcccttacacgctttggag---------------------------

upper sequence: GLYMA08G20100.1 (Glycine max), 5'ss of exon 9
lower sequence: EFJ37593 (Selaginella moellendorffii), 5'ss of exon 9
ACGAGGAGCCATAGTCACAACCTTCATTGTTTGCTATGCTCTCACATCTTTCATTTCTGGTTATGTGAGTGGGGGAATGTACTCACGTAATGGGGgtaagaatttgcattgatctttgctacatgtttgtttgggtgcttctctctccctctgaatgattataaccgtgcttataattttcag
 || ||||| ||||| |||||||||||||| ||||| ||||| || || ||||| || |||||||| ||||| ||  | ||||| || || |  |||| |         | ||  || |||| |||     |        ||  | | || || |  |                         
GCGGGGAGCAATAGTGACAACCTTCATTGTATGCTACGCTCTTACGTCATTCATCTCCGGTTATGTTAGTGGCGGGTTTTACTCGCGAAACGATGgtagg---------taatgctt-ctacctgtggtgctaacaatcccttacacgctttggagcag------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192331779|gb|FK024883.1|FK024883
EST:     ATCTTTCATTTCTGGTTATGTGAGTGGGGGGATGTACTCACGTAATGGGG                         GTAAAAATTGGATTAAATCCATGATCCTTACAGCATCACTGTTCCCTTTCA
genomic: ATCTTTCATTTCTGGTTATGTGAGTGGGGGAATGTACTCACGTAATGGGGgtaagaattt ... taattttcagGTAAAAATTGGATTAAATCCATGATCCTTACAGCATCACTGTTCCCATTCA