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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATCTTTGGACATGACATATTCTGTCAAATGGTCTCCTACGAATGTCACTTTTGGACGCCGATTTGATGTATACCTGGACTATCCGTTCTTTGAGCATCAGgtgaaaatcattgctgctagctttgtattttagattgaagaggtgtttattgttggttacctgctatgtgttcagtcatgtggatcctatcttagccatgtcactgagagaactttgatccgttttctttctgtag

Basic information

species Glycine max
transcript GLYMA08G20100.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G20100.1 (Glycine max), 5'ss of exon 6
lower sequence: LOC_Os12g07670.1 (Oryza sativa), 5'ss of exon 6
ATCTTTGGACATGACATATTCTGTCAAATGGTCTCCTACGAATGTCACTTTTGGACGCCGATTTGATGTATACCTGGACTATCCGTTCTTTGAGCATCAGgtgaaaatcattgctgctagctttgtattttagattgaagaggtgtttattgttggttacctgctatgtgttcagtcatgtg-----gatcctatcttagccatgtcactgagagaactttgatccgttttctttctgtag-----------------------------------------------
    ||||||||||||||||| || || ||||  |  ||  |||| || |||| |||||| ||||| ||||||||||| ||||| ||||||||||| ||||| | | |  || |  ||             |||   || |  | |   |     |   |   |    || | | | |||||     ||    || |||    |  ||   || || ||  ||  ||| || ||  | | |                                               
GAAATTGGACATGACATATTCAGTGAAGTGGTTACAAACAGATGTGACCTTTGCACGCCGCTTTGAAGTATACCTGGATTATCCTTTCTTTGAGCACCAGgtaatatt--ttcccact---------ccaaagaaaaaaaaactatgcgtaacatgcagctctcagcttgcttacttatgtgaaagagaaaaaatgttaattgtaacaac-agggagct--gaatcgtcttgttctttttgaaagttgttcaaaggttctgacttctatgcaaatttctaatgttcag

upper sequence: GLYMA08G20100.1 (Glycine max), 5'ss of exon 6
lower sequence: LOC_Os02g34690.1 (Oryza sativa), 5'ss of exon 6
ATCTTTGGACATGACATATTCTGTCAAATGGTCTCCTACGAATGTCACTTTTGGACGCCGATTTGATGTATACCTGGACTATCCGTTCTTTGAGCATCAGgtgaaaatc--attgctgcta-----gctttgtattttagattgaagag-gtgtttattgttggttacctgctatgtgttcagtcatg--tggatcctatcttagccatgt-cactgagagaactttgatccgtt---------ttctttctgtag---
  | ||||| ||||||||||||||||| |||   || || ||||| || ||||  | ||| |||||||||||||| ||||| || |||||||| || ||||| | ||     || |||| |     || | ||  |  |  |||       ||| | ||||||   |  | | |  |    | | |||  | ||| ||   ||  ||||||  |    |     |||  || |           | | || | | |   
GGCATTGGATATGACATATTCTGTCAAGTGGGAACCAACCAATGTAACATTTGCTCACCGCTTTGATGTATACCTTGACTACCCTTTCTTTGAACACCAGgtaagaactcagtttctgcaattaaagcctggttctgcaccttggttcttatgtattttgttgccaattttccacataaaaaattatgccttgattctcaatttcccatgtatatcttgcagcatttcctctgaccacagataatccattttatggcag

upper sequence: GLYMA08G20100.1 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM2G026231_T01 (Zea mays), 5'ss of exon 6
ATCTTTGGACATGACATATTCTGTCAAATGGTCTCCTACGAATGTCACTTTTGGACGCCGATTTGATGTATACCTGGACTATCCGTTCTTTGAGCATCAGgtgaaaatcattgctgctagctttgtattttagattgaagaggtgtttattgttggttacctgctatgtgttcagtcatgtggatcctatcttagccatgtcactgagagaactttgatc-cgttttctttctgtag
     |||| ||||||||||| || || |||    | ||  ||||  | |||| |||||| ||||| || |||||||||||||| |||||||| || ||||||| |              |||||| ||  |||           ||| | |||  |   | ||| | | |||   | | |  |     | ||||  ||   |       | || || ||   |||    | |  ||
GAAACTGGAAATGACATATTCAGTGAAGTGGGTAGCAACAGATGTGTCATTTGCACGCCGTTTTGAAGTGTACCTGGACTATCCTTTCTTTGAACACCAGgtgata--------------ctttgt-ttgcagacaaccagaaactttctagtttctattcagctgtatcttc---ccttttaactaactattagaaatccta-------agctctgttcatatttctcattttcag

upper sequence: GLYMA08G20100.1 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM2G420310_T01 (Zea mays), 5'ss of exon 6
ATCTTTGGACATGACATATTCTGTCAAATGGTCTCCTACGAATGTCACTTTTGGACGCCGATTTGATGTATACCTGGACTATCCGTTCTTTGAGCATCAGgtgaaaatcattgctgctagctttgtattttagattgaagaggtgtttattgttggttacctgctatgtgttcagtcatgtggatcctatcttagccatgtcactgagagaactttgatccgttttctttctgtag------
    ||||| ||||||||||| || || |||    | ||  ||||  | |||| |||||| ||||| || |||||||||||||| |||||||| || ||||||| |              |||||| || ||||              |  |     | |||  | | |||||||   |||   | |  | ||| | | |  | |   ||  ||  | || |||    ||    |       
GAAATTGGAAATGACATATTCAGTGAAGTGGGTAGCGACTGATGTGTCATTTGCACGCCGTTTTGAAGTGTACCTGGACTATCCTTTCTTTGAACACCAGgtgata--------------ctttgt-ttgtagaca------------accgacaacttcctagtttctgttcagc--tgtaccttcccttttaacta-gctattagaagtcctaagctctgttcatatttctcatttccag

upper sequence: GLYMA08G20100.1 (Glycine max), 5'ss of exon 6
lower sequence: AT1G10950.1 (Arabidopsis thaliana), 5'ss of exon 6
ATCTTTGGACATGACATATTCTGTCAAATGGTCTCCTACGAATGTCACTTTTGGACGCCGATTTGATGTATACCTGGACTATCCGTTCTTTGAGCATCAGgtgaaaatcattgctgctagctttgtattttagattgaagaggtgtttattgttggttacctgctatgtgttcagtcatgtggatcctatcttagccatgtcactgagagaactttgatccgttttctttctgtag
|    ||||| |||| ||||||||  |||||  ||| || |||||||| ||||  ||||| ||||| ||||| ||||| |||||||||||||| || ||||| |   | |    |||||    |   | ||  |       |     || |||  || |      ||| ||||| |  | |  |   ||||  |   |   | |                                
AAAAATGGACCTGACGTATTCTGTGCAATGGATTCCAACAAATGTCACATTTGCTCGCCGCTTTGACGTATATCTGGATTATCCGTTCTTTGAACACCAGgtaacttttagca-tgctatgaattagtcttgtacccttctg----ctactgtctgtgattccaaatg-gttcactggtttataatgtatcacactgaatacccca------------------------------

upper sequence: GLYMA08G20100.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv12s0035g00280.t01 (Vitis vinifera), 5'ss of exon 6
ATCTTTGGACATGACATATTCTGTCAAATGGTCTCCTACGAATGTCACTTTTGGACGCCGATTTGATGTATACCTGGACTATCCGTTCTTTGAGCATCAGgtgaaaatcattgctgctagctttgtattttagattgaagaggtgtttattgttggttacctgcta-tgtgttcagt-catgtggatcctatcttagccatgtcactgagagaactttgatccgttttctttctgtag
| | || ||||||||||||||||| ||||||  |||||| | |||||||||||  || || |||||||| || ||||| || || |||||||| || ||||||||  || ||  || ||            | |||  | |  ||  ||  | |  |||  ||| | | | |||| | ||  |   || ||  |   ||||||   |                               
AACATTAGACATGACATATTCTGTTAAATGGATTCCTACTACTGTCACTTTTGCTCGTCGTTTTGATGTTTATCTGGATTACCCTTTCTTTGAACACCAGgtgaatttc-ttattggta------ctcaccaaattagaaaaatgaatagggcta-ttagttgcaactttcttcaatgcacttccctcttaattgccccatgtgttta------------------------------

upper sequence: GLYMA08G20100.1 (Glycine max), 5'ss of exon 6
lower sequence: EFJ15096 (Selaginella moellendorffii), 5'ss of exon 6
ATCTTTGGACATGACATATTCTGTCAAATGGTCTCCTACGAATGTCACTTTTGGACGCCGATTTGATGTATACCTGGACTATCCGTTCTTTGAGCATCAGgtgaaaatcattgctgctagctttgtattttagattgaagaggtgtttattgttggttacctgctatgtgttcagtcatgtggatcctatcttagccatgtcactgagagaactttgatccgttttctttctgtag
|||  ||||  | ||||| || || ||||||      || ||    | |||        |||||||||  |||||||||||||| |||||||||||||||||     |  ||| ||   |  || | |   || || ||    || || | ||    | | |||                                                                        
ATCCCTGGAGTTTACATACTCCGTGAAATGGATCGAGACAAACACGAGTTTCCACAAGAGATTTGATGCCTACCTGGACTATCCATTCTTTGAGCATCAGgt-----ttgttgttgtctgtctt-tgtacaagtttaaactcctgcttgtggt-atcttcgtgcag----------------------------------------------------------------------

upper sequence: GLYMA08G20100.1 (Glycine max), 5'ss of exon 6
lower sequence: EFJ37593 (Selaginella moellendorffii), 5'ss of exon 6
ATCTTTGGACATGACATATTCTGTCAAATGGTCTCCTACGAATGTCACTTTTGGACGCCGATTTGATGTATACCTGGACTATCCGTTCTTTGAGCATCAGgtgaaaatcattgctgctagctttgtattttagattgaagaggtgtttattgttggttacctgctatgtgttcagtcatgtggatcctatcttagccatgtcactgagagaactttgatccgttttctttctgtag
|||  ||||  | ||||| || || ||||||      || ||    | |||        |||||||||  |||||||||||||| |||||||||||||||||     |  |||  |   |  || | |   || || ||    || || | ||    | | |||                                                                        
ATCCCTGGAGTTTACATACTCCGTGAAATGGATCGAGACAAACACGAGTTTCCACAAGAGATTTGATGCCTACCTGGACTATCCATTCTTTGAGCATCAGgt-----ttgttgtcgtctgtctt-tgtacaagtttaaactcctgcttgtggt-atcttcgtgcag----------------------------------------------------------------------