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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcagaagttatttaagtatctttgctaccttatgctgttttgggattcatggagtgcatacttaggttaggtccatttcattgcagATCATTCATGTTAATCTAACTTATGACAACCCAAGGCCTCTGGAAGTAGGAAAATCTTTGGACATGACATATTCTGTCAAATGGTCTCCTACGAATGTCA

Basic information

species Glycine max
transcript GLYMA08G20100.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G20100.1 (Glycine max), 3'ss of exon 5
lower sequence: AT1G10950.1 (Arabidopsis thaliana), 3'ss of exon 5
gtcagaagttatttaagtatctttgctaccttatgc-tgttttgggattcatggagtgcatacttaggttaggtccatttcattgcagATCATTCATGTTAATCTAACTTATGACAACCCAAGGCCTCTGGAAGTAGGAAAATCTTTGGACATGACATATTCTGTCAAATGGTCTCCTACGAATGTCA
||| |  ||||   | |    |  || |   ||||  | |  || ||   |     ||    |||| ||    || |||| |    ||||||||||||||||||| ||| | ||||||||||||||  |||||| ||| |||    ||||| |||| ||||||||  |||||  ||| || |||||||
gtcggttgttacc-acgccattaagcaatagtatggatatcatgtgaactacatc-tgtgatcttatgt---atctatttta--atagATCATTCATGTTAATCTCACTCAAGACAACCCAAGGCCATTGGAAGCAGGGAAAAAAATGGACCTGACGTATTCTGTGCAATGGATTCCAACAAATGTCA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atgctgttttgggattcatggagtgcatacttaggttaggtccatttcattgcagATCATTCATGTTAATCTAACTTATGACAACCCAAGGCCTCTGGAAGTAGGAAAATCTTTGGACATGACATATTCTGTCAAATGGTCTCCTACGAATGTCA
                                        tccatttc  CT-rich tract
                                           atttcatt  TA-rich tract