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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCCGTTCACCTGGTAATCCTGCACACAAATGGGGTGGTCTTGGTGAGGTCCTGGGTGGCAATGAACTCATTGATAGCCAACTTGAGATAAAGTTCCTAGgtatggaggtttctttcatcctatttatttcataagacccatcagttgacaaaactggctttaacagttattttataattaatttttaag

Basic information

species Glycine max
transcript GLYMA08G20100.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G20100.1 (Glycine max), 5'ss of exon 2
lower sequence: LOC_Os12g07670.1 (Oryza sativa), 5'ss of exon 2
TGCCGTTCACCTGGTAATCCTGCACACAAATGGGGTGGTCTTGGTGAGGTCCTGGGTGGCAATGAACTCATTGATAGCCAACTTGAGATAAAGTTCCTAGgtatg--gaggtttctttcatcctatttatttcataagacccatcagttgacaaaactggctttaacagttattttataattaatttttaag----------------------------
|| |   || |||  || ||||| || ||||||||||||||||| |||||||||||||| ||||| || |||||||| ||  |||| ||||||||| || |||||   |  |||||||||| ||||   |||  | |   | |  | |||    ||   ||   |    ||  | |||  |    | ||| |                            
TGTCAACCATCTGAGAACCCTGCGCATAAATGGGGTGGTCTTGGAGAGGTCCTGGGTGGAAATGAGCTGATTGATAGTCAGATTGACATAAAGTTCTTAAgtatgtcaatctttctttcattctatccttttgttta--tctactatttgctctaat--gccccacagattggtgtattttcttgtcttatgaattgtataagtgcttcctttggtttag

upper sequence: GLYMA08G20100.1 (Glycine max), 5'ss of exon 2
lower sequence: LOC_Os11g07910.1 (Oryza sativa), 5'ss of exon 2
TGCCGTTCACCTGGTAATCCTGCACACAAATGGGGTGGTCTTGGTGAGGTCCTGGGTGGCAATGAACTCATTGATAGCCAACTTGAGATAAAGTTCCTAGgtatggaggtt-----------tctttcatcctattta-tttcataagacccatcagt---------tgacaa--aactggctttaacagttattttataattaatttttaag------
|| |   || |||  || || |||||||||||||||||||| || |||||||| || |||||||| || || ||||| ||  |||| ||||||||  || ||| |  | |            || || ||  |||||| |||   ||    ||||| |         |  |||  ||| |  ||        |||||| | | || || |  |      
TGTCAGCCATCTGAAAACCCCGCACACAAATGGGGTGGTCTCGGAGAGGTCCTTGGCGGCAATGAGCTGATCGATAGTCAGGTTGATATAAAGTTTTTAAgtaagttgatcttttcataccctccttgattttatttacttttggaatgtgcatcaatgtatgttccttgcaactaaccgatttccctgaccattttacattaaacttctttgttttag

upper sequence: GLYMA08G20100.1 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G420310_T01 (Zea mays), 5'ss of exon 2
TGCCGTTCACCTGGTAATCCTGCACACAAATGGGGTGGTCTTGGTGAGGTCCTGGGTGGCAATGAACTCATTGATAGCCAACTTGAGATAAAGTTCCTAGgtatgg-aggtttctttcat--cctatttatttc---ataagacccatcagttgacaaaactggc---tttaacagttattttataattaatttttaag----------------
|| |   |  |||  || ||| |||| ||||||||||||||||| |||||||||||||| ||||| || |||||||| || ||||| ||||||||| || |||||  |  ||  | ||||  | |  || ||||    ||      || ||    |  | ||  |   | ||||  ||   |  || |   | | |||                 
TGTCAACCGTCTGAGAACCCTACACATAAATGGGGTGGTCTTGGAGAGGTCCTGGGTGGAAATGAGCTGATTGATAGTCAGCTTGAAATAAAGTTCTTAAgtatgccatattgttctcatttcttccttgtttctatttagtgtttattagaaagctgatctaacaagtataactttttcgtcttactgcctgtataaatgttactttggtctag

upper sequence: GLYMA08G20100.1 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G026231_T01 (Zea mays), 5'ss of exon 2
TGCCGTTCACCTGGTAATCCTGCACACAAATGGGGTGGTCTTGGTGAGGTCCTGGGTGGCAATGAACTCATTGATAGCCAACTTGAGATAAAGTTCCTAGgtatg-----gaggtttc--tttcatcctatttattt-cataagacccatcagttgacaaaactggctttaacagttattttataattaatttttaag-------------------------------------
|| |   |  |||  || ||  |||| ||||||||||||||||| |||||||| ||||| ||||| || |||||||| || ||||| ||||||||| || |||||        ||| |  ||||||||| ||| |||   ||      ||  |    |  | || |  |   |  ||  |  |    ||| ||||                                        
TGTCAACCGTCTGAGAACCCCACACATAAATGGGGTGGTCTTGGAGAGGTCCTTGGTGGAAATGAGCTGATTGATAGTCAGCTTGAAATAAAGTTCTTAAgtatgcccatactgttcccatttcatcctttttctttatttactgtttattggaaagctgatctagtatgtgcttttcctgcaagtataactttttttttgtctcactgactgtataaatgttactttggtctag

upper sequence: GLYMA08G20100.1 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G087212_T01 (Zea mays), 5'ss of exon 2
TGCCGTTCACCTGGTAATCCTGCACACAAATGGGGTGGTCTTGGTGAGGTCCTGGGTGGCAATGAACTCATTGATAGCCAACTTGAGATAAAGTTCCTAGgtatggaggtttcttt----catcct------atttatttcataa-gacccatcagttgaca-aaactggctttaacagttattttataattaatttttaag------------------------------
|| |   || |||  || |||||||| |||||||||||||| || |||||||| ||||| ||||| || |||||||| ||  | || ||||||||| || |||||   |  |  |     ||||||       ||| |||  |   |  |  |   ||||   |   | | ||       |   ||  | ||| ||| |  |                              
TGTCAACCATCTGAAAACCCTGCACATAAATGGGGTGGTCTCGGAGAGGTCCTTGGTGGAAATGAGCTGATTGATAGTCAGATCGATATAAAGTTCATAAgtatgcttgccttatcttgacatcctcctgaagtttgttttttcttggactgtgtattgatgcatgtttgtttctgtgactgaattg-atttattttgttggcttttcattttattgtttcttttgttttag

upper sequence: GLYMA08G20100.1 (Glycine max), 5'ss of exon 2
lower sequence: AT1G10950.1 (Arabidopsis thaliana), 5'ss of exon 2
TGCCGTTCACCTGGTAATCCTGCACACAAATGGGGTGGTCTTGGTGAGGTCCTGGGTGGCAATGAACTCATTGATAGCCAACTTGAGATAAAGTTCCTAGgtatgg---aggtttctttcatcctatttatttcataagacccatcagttgacaaa-actggctttaacagttattttataattaatttttaag-----------
|||||  || |||| ||   ||  ||||||||||||||||||||||| || || ||||| ||||| || ||||| ||  |  ||| |||||| ||| |  ||| |    |  | |  | ||  || | | |||||||  |   | |||||  |  | | | |   | |   |    ||| |||   ||||               
TGCCGCCCATCTGGAAACAATGTTCACAAATGGGGTGGTCTTGGTGAAGTTCTAGGTGGAAATGAGCTGATTGACAGTGAGATTGCGATAAAATTCATGAgtacgtttcaattcttatacaagct-tctttttcatactagttaacagttatcgtacattcgtacttattctctagttacaataccttttctgttttttccacag

upper sequence: GLYMA08G20100.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv18s0041g00680.t01 (Vitis vinifera), 5'ss of exon 2
TGCCGTTCACCTGGTAATCCTGCACACAAATGGGGTGGTCTTGGTGAGGTCCTGGGTGGCAATGAACTCATTGATAGCCAACTTGAGATAAAGTTCCTAGgtatggaggtttctttcatcct--atttatttcataagacccatcagttgacaaaactggctttaacagttattttataattaatttttaag
|| |   | ||||| ||| | |  ||||| |||||||| |||||||| || |||||||| ||||| ||||||||||||||| |||| || |||||   | ||||| |  | || || ||  |  ||| || |   |||       |     ||| ||     | | || || |||    |            
TGTCACCCTCCTGGCAATGCAGGTCACAAGTGGGGTGGCCTTGGTGAAGTTCTGGGTGGAAATGAGCTCATTGATAGCCAAATTGATATGAAGTTTAAAAgtatgtacttctcctttattattcattcatatgtcaagtatggctaaggaccaacaccaatataaccatttctttgggcag-----------