Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TACTACTACTATGTGAAGACGAAGATGTCAGGCTTCTTCCAAACCAGCTTCTATTTTGGATACACTTTGATGTTTTGTCTTGGGCTGGGAATTCTGTGTGgtaagtcttcagtttaattgtaatctctgtttggattgtgtgttcactctgcagaattgggataccttgtccttagtcaattgccaaatacctcttttttatattaatattaatgctagagtagagtgttcttaatcttatcatatggattaaatttttctccaaatgtgcag

Basic information

species Glycine max
transcript GLYMA08G20100.1
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G20100.1 (Glycine max), 5'ss of exon 11
lower sequence: LOC_Os11g07910.1 (Oryza sativa), 5'ss of exon 11
TACTACTACTATGTGAAGACGAAGATGTCAGGCTTCTTCCAAACCAGCTTCTATTTTGGATACACTTTGATGTTTTGTCTTGGGCTGGGAATTCTGTGTGgtaagtcttcagtttaattgtaatctctgtttggattgtgtgttcactctgcagaattgggataccttgtccttagtcaattgccaaatacctcttttttatattaatattaatgctagagtagagtgttcttaatcttatcatatggattaaatttttctccaaatgtgcag
||||| ||  | |||||||| |||||||| ||||||||||| || |||||||| ||||| ||||| |||||||| || || || || |||||||| || ||| ||  || |   |  |  | ||     ||   ||||     |   ||||     ||  || |||  ||| || ||  |                                                                                             
TACTATTATCACGTGAAGACAAAGATGTCTGGCTTCTTCCAGACAAGCTTCTACTTTGGCTACACCTTGATGTTCTGCCTCGGACTAGGAATTCTTTGCGgtgagcatttaaacttgtattcattgtatttcaaattgc-cacttggtctg-----ttttgacaccacgtctttggtttag--------------------------------------------------------------------------------------------

upper sequence: GLYMA08G20100.1 (Glycine max), 5'ss of exon 11
lower sequence: LOC_Os12g07670.1 (Oryza sativa), 5'ss of exon 11
TACTACTACTATGTGAAGACGAAGATGTCAGGCTTCTTCCAAACCAGCTTCTATTTTGGATACACTTTGATGTTTTGTCTTGGGCTGGGAATTCTGTGTGgtaagtcttcagtttaattgtaatctctgtttggattgtgtgttcactctgcagaattgggataccttgtccttagtcaattgccaaatacctcttttttatattaatattaatgctagagtagagtgttcttaatcttatcatatggattaaatttttctccaaatgtgcag
||||||||  |||| ||||| ||||||||||| || ||||| || || ||||| || || ||||| |||||||| || ||||| || || || || |||||||||   | | |||   |   |   |  |||     |||     || ||  |  |||  |||   ||    ||      |           ||                                                                               
TACTACTATCATGTAAAGACAAAGATGTCAGGTTTTTTCCAGACGAGTTTCTACTTCGGTTACACATTGATGTTCTGCCTTGGTCTAGGCATACTTTGTGgtaagatcttaattt--ctactagtaccttttaatccgtg-----acactttatcattatgatgtttttgttttgacatctgttttggcgattcag-----------------------------------------------------------------------------

upper sequence: GLYMA08G20100.1 (Glycine max), 5'ss of exon 11
lower sequence: GRMZM2G420310_T01 (Zea mays), 5'ss of exon 11
TACTACTACTATGTGAAGACGAAGATGTCAGGCTTCTTCCAAACCAGCTTCTATTTTGGATACACTTTGATGTTTTGTCTTGGGCTGGGAATTCTGTGTGgtaagtcttcagtttaattgtaatctctgtttggattgtgtgttcactctgcagaattgggataccttgtccttagtcaattgccaaatacctcttttttatattaatattaatgctagagtagagtgttcttaatcttatcatatggattaaatttttctccaaatgtgcag
||||||||| |||||||||| |||||||||||||||||||| || || |||||||| || |||||  ||||||| || ||||| || || || || |||||||||    |  || ||    |     ||  | |    |   |     |||     ||  | |  ||   |  | |||  |||     |   ||                                                                               
TACTACTACCATGTGAAGACAAAGATGTCAGGCTTCTTCCAGACAAGTTTCTATTTCGGCTACACGCTGATGTTCTGCCTTGGCCTAGGCATACTTTGTGgtaagatcgcctttcaaccaaagatcatgccttggcaatagatgtga-ctgt----ttttggtctctgacctgtcgtcttttgtttggtgattccag----------------------------------------------------------------------------

upper sequence: GLYMA08G20100.1 (Glycine max), 5'ss of exon 11
lower sequence: GRMZM2G087212_T01 (Zea mays), 5'ss of exon 11
TACTACTACTATGTGAAGACGAAGATGTCAGGCTTCTTCCAAACCAGCTTCTATTTTGGATACACTTTGATGTTTTGTCTTGGGCTGGGAATTCTGTGTGgtaagtcttcagtttaattgtaatctctgtttggattgtgtgttcactctgcagaattgggataccttgtccttagtcaattgccaaatacctcttttttatattaatattaatgctagagtagagtgttcttaatcttatcatatggattaaatttttctccaaatgtgcag
||||| ||  |||||||||| ||||||||||| || ||||| || |||||||| ||||| ||||| |||||||| ||||||||  ||||||| || || ||| ||||||||   |  || | ||||   |||   |  |    |     ||     ||  || ||||| ||  |    |  ||                                                                                          
TACTATTATCATGTGAAGACAAAGATGTCAGGATTTTTCCAGACAAGCTTCTACTTTGGTTACACCTTGATGTTCTGTCTTGGATTGGGAATACTTTGCGgtgagtcttcaaacttgttttcatcta-atttcagtcttacagtggtcgtg-----ttttgacacctt-tctatgtgtatatgtag---------------------------------------------------------------------------------------

upper sequence: GLYMA08G20100.1 (Glycine max), 5'ss of exon 11
lower sequence: GRMZM2G026231_T01 (Zea mays), 5'ss of exon 11
TACTACTACTATGTGAAGACGAAGATGTCAGGCTTCTTCCAAACCAGCTTCTATTTTGGATACACTTTGATGTTTTGTCTTGGGCTGGGAATTCTGTGTGgtaagtcttcagtttaattgtaatctctgtttggattgtgtgttcactctgcagaattgggataccttgtccttagtcaattgccaaatacctcttttttatattaatattaatgctagagtagagtgttcttaatcttatcatatggattaaatttttctccaaatgtgcag
||||||||| |||||||||| |||||||||||||||||||| || || ||||| ||||| |||||  ||||||| || ||||| || || || || |||||||||     | | |   | |    | | | ||  || |  |||         ||  || |||   |  |  | | |||                                                                                              
TACTACTACCATGTGAAGACAAAGATGTCAGGCTTCTTCCAGACAAGTTTCTACTTTGGTTACACACTGATGTTCTGCCTTGGTCTAGGCATACTTTGTGgtaagctaatattgtgcctctgcaatatatgtgacttttcggttttt------gacctgtgatttttgttggtgattcag---------------------------------------------------------------------------------------------

upper sequence: GLYMA08G20100.1 (Glycine max), 5'ss of exon 11
lower sequence: AT1G10950.1 (Arabidopsis thaliana), 5'ss of exon 11
TACTACTACTATGTGAAGACGAAGATGTCAGGCTTCTTCCAAACCAGCTTCTATTTTGGATACACTTTGATGTTTTGTCTTGGGCTGGGAATTCTGTGTGgtaagtcttcagtttaattgtaatctctgtttggattgtgtgttcactctgcagaattgggataccttgtccttagtcaattgccaaatacctcttttttatattaatattaatgctagagtagagtgttcttaatcttatcatatggattaaatttttctccaaatgtgcag
|| |||||||| || ||||| |||||||| || |||||||| || |||||||| |||||||||||  ||||||| |||||||| || ||||| || || ||| ||   ||| | |  |      |||| ||   | |      |     |   || |||      ||   |||| || |  ||  ||||    |                                                                               
TATTACTACTACGTAAAGACCAAGATGTCCGGATTCTTCCAGACAAGCTTCTACTTTGGATACACCATGATGTTCTGTCTTGGCCTTGGAATCCTTTGCGgtgagc--tcactctcttca----ctctcttcaaactagcgagtggtgttattgatttga-----ctaaaccttcgttatgtga-aaattttgcag-----------------------------------------------------------------------------

upper sequence: GLYMA08G20100.1 (Glycine max), 5'ss of exon 11
lower sequence: Vv12s0035g00280.t01 (Vitis vinifera), 5'ss of exon 11
TACTACTACTATGTGAAGACGAAGATGTCAGGCTTCTTCCAAACCAGCTTCTATTTTGGATACACTTTGATGTTTTGTCTTGGGCTGGGAATTCTGTGTGgtaagtcttcagtttaattgtaatctctgtttggattgtgtgttcactctgcagaattgggataccttgtccttagtcaattgccaaatacctcttttttatattaatattaatgctagagtagagtgttcttaatcttatcatatggattaaatttttctccaaatgtgcag
|| ||||||||||||||||| |||||||||||||||||||||||||||||||| || ||||||||  |||||||||| |||||  | ||||| || |||||| ||| |  |   |  || | ||  || |||  ||  | |||  ||  |           || | |||   ||  |        ||||  |  ||| | | |                                                                      
TATTACTACTATGTGAAGACTAAGATGTCAGGCTTCTTCCAAACCAGCTTCTACTTCGGATACACCCTGATGTTTTGCCTTGGTTTAGGAATCCTCTGTGgtgagtttctacggtg-ttctgattcctttttttataatttgtgtaccttatttttcacatattcattgatttttat-----atgaaatttcattttctaaaaaag-------------------------------------------------------------------

upper sequence: GLYMA08G20100.1 (Glycine max), 5'ss of exon 11
lower sequence: Vv18s0041g00680.t01 (Vitis vinifera), 5'ss of exon 11
TACTACTACTATGTGAAGACGAAGATGTCAGGCTTCTTCCAAACCAGCTTCTATTTTGGATACACTTTGATGTTTTGTCTTGGGCTGGGAATTCTGTGTGgtaagtcttcagtttaattgtaatctctgtttggattgtgtgttcactctgcagaattgggataccttgtccttagtcaattgccaa-atacctcttttttatattaatatta---atgctagagtagagtgttctt-aatcttatcatatggattaaatttttctccaaatgtgcag-
|| ||||| ||| ||||||| ||||||||||||||||||||||||||||| |||||||| |||||| | ||||| || |||||  |||| || |||||||||||||   || | | |    ||| | | |||   || | |  || ||||  |    |      |  | ||| ||   |     | | ||| || | |       |  | |||   || ||    |  | | |||||       ||     || ||   || |||||   ||   |   
TATTACTATTATATGAAGACCAAGATGTCAGGCTTCTTCCAAACCAGCTTTTATTTTGGTTACACTCTCATGTTATGCCTTGGTTTGGGGATACTGTGTGgtaagtagccattcttagctcaatttttttttaacttctct-ctctctctctatctctatctctctatctccctatctatccatctatatatctatctccagccgttcttttagacatccttatctgcaattttcttcgggagcattgatggggttttgttattctcttgatactctag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10847708|gb|BF070348.1|BF070348
EST:     CTATTTTGGATACACTTTGATGTTTTGTCTTGGGCTGGGAATTCTGTGTG                         GAGCTGTGGGTTATCTTGGTACGAATTTGTTTCGTG-GGACGATCTAC
genomic: CTATTTTGGATACACTTTGATGTTTTGTCTTGGGCTGGGAATTCTGTGTGgtaagtcttc ... aaatgtgcagGAGCTGTGGGTTATCTTGGTTCGAATTTGTTT-GTGAGGAGGATCTAC
EST: gi|193642991|gb|FK592919.1|FK592919
EST:     CTATTTTGGATACACTTTGATGTTTTGTCTTGGACTGGGAATTCTGTGTG                         GAGCTGTGGGTTATCTTGGTTCGAATTTGTTTGTGAGGAGGATCTACAGAA
genomic: CTATTTTGGATACACTTTGATGTTTTGTCTTGGGCTGGGAATTCTGTGTGgtaagtcttc ... aaatgtgcagGAGCTGTGGGTTATCTTGGTTCGAATTTGTTTGTGAGGAGGATCTACAGAA
EST: gi|19935331|gb|BQ080361.1|BQ080361
EST:     CTATTTTGGATACACTTTGATGTTTTGTCTTGGGCTGGGAAT-CTGTGTG                         GAGCTGTGGGGTATCTTGG
genomic: CTATTTTGGATACACTTTGATGTTTTGTCTTGGGCTGGGAATTCTGTGTGgtaagtcttc ... aaatgtgcagGAGCTGTGGGTTATCTTGG
EST: gi|58015230|gb|CX701972.1|CX701972
EST:     CTATTTTGGATACACTTTGATGTTTTGTCTTGGGCTGGGAATTCTGTGTG                         GAGCTGTGGGTTATCTTGGTTCGAATTTGTTTGTGAGGAGGATCTACAGAA
genomic: CTATTTTGGATACACTTTGATGTTTTGTCTTGGGCTGGGAATTCTGTGTGgtaagtcttc ... aaatgtgcagGAGCTGTGGGTTATCTTGGTTCGAATTTGTTTGTGAGGAGGATCTACAGAA
EST: gi|22932835|gb|BU549974.1|BU549974
EST:     CTATTNNNNATACACTTTGATGTTTTGTCTTGGGCTGGGAATTCTGTGTG                         GAGCTGTGGGTTATCTTGGTTCGAATTTGTTTGTGAGGAGGATCTACAGAA
genomic: CTATTTTGGATACACTTTGATGTTTTGTCTTGGGCTGGGAATTCTGTGTGgtaagtcttc ... aaatgtgcagGAGCTGTGGGTTATCTTGGTTCGAATTTGTTTGTGAGGAGGATCTACAGAA
EST: gi|16105838|gb|BI893578.1|BI893578
EST:     CTATTTTGGATACACTTTGATGTTTTGTCTTGGACTGGGAATTCTGTGTG                         GAGCTGTGGGTTATCTTGGTTCGAATTTGTTTGTGAGGAGGATCTACAGAA
genomic: CTATTTTGGATACACTTTGATGTTTTGTCTTGGGCTGGGAATTCTGTGTGgtaagtcttc ... aaatgtgcagGAGCTGTGGGTTATCTTGGTTCGAATTTGTTTGTGAGGAGGATCTACAGAA
EST: gi|112361099|gb|EE400060.1|EE400060
EST:     CTATTTTGGATACACTTTGATGTTTTGTCTTGGGCTGGGAATTCTGTGTG                         GAGCTGTGGGTTATCTTGGTTCGAATTTGTTTGTGAGGAGGATCTACAGAA
genomic: CTATTTTGGATACACTTTGATGTTTTGTCTTGGGCTGGGAATTCTGTGTGgtaagtcttc ... aaatgtgcagGAGCTGTGGGTTATCTTGGTTCGAATTTGTTTGTGAGGAGGATCTACAGAA