1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
CTCTCAGGGCTCGTGTGGCTGCTAAGACAGAAGAAAAGAAATTGGAGCTGCTGTTTCTTCAGTGGAGTGAGCATCGTAAAAGACTAAGCAATTTTATAAGgtttgcccttttcaactgtaagctaatgggcctgagtctatagctagtcccttcaagaactggacatctattatatctgatatcaaataatgctatgctctgcag
species | Glycine max |
transcript | GLYMA08G19640.3 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: CTGTTTCTTCAGTGGAGTGAGCATCGTAAAAGACTAAGCAATTTTATAAG GTTATTTTTAATTTEST: gi|13311761|gb|BG405412.1|BG405412
genomic: CTGTTTCTTCAGTGGAGTGAGCATCGTAAAAGACTAAGCAATTTTATAAGgtttgccctt ... tgctctgcagGTTATTTTTAATTT
EST: CTGTTTCTTCAGTGGAGTGAGCATCGT-AAAGACTAAGCAATTTTATAAG GTTATTTTTAATTTTGGTCCAAAAGTGTCCATATTCACATTTTATTCAGACEST: gi|193492048|gb|FK453464.1|FK453464
genomic: CTGTTTCTTCAGTGGAGTGAGCATCGTAAAAGACTAAGCAATTTTATAAGgtttgccctt ... tgctctgcagGTTATTTTTAATTTTGGTCCAAAAGTGTCCATATTCACATTTTATTCAGAC
EST: CTGTTTCTTCAGTGGAGTGAGCATCGTAAAAGACTAAGCAATTTTATAAG GTTATTTTTAATTTTGGTCCAAAAGTGTCC
genomic: CTGTTTCTTCAGTGGAGTGAGCATCGTAAAAGACTAAGCAATTTTATAAGgtttgccctt ... tgctctgcagGTTATTTTTAATTTTGGTCCAAAAGTGTCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTCTCAGGGCTCGTGTGGCTGCTAAGACAGAAGAAAAGAAATTGGAGCTGCTGTTTCTTCAGTGGAGTGAGCATCGTAAAAGACTAAGCAATTTTATAAGgtttgcccttttcaactgtaagctaatgggcctgagtctatagctagtcccttcaagaactggacatctattatatctgatatcaaataatgctatgctctgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA