1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
GCTGAGCAAAGGGCTCGTGAAGAAAGTGAAAGGCTTAGGAAAGAAGAGCGTGAACAGATTGCTGAAAAACGAAGGAGAGACTTGgtttgttttcaataataactattctttgctattcataatagatcatgctacattctgattctcattaacaattatattttttttacctattcccatcag
species | Glycine max |
transcript | GLYMA08G19640.3 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: TTAGGAAAGAAGAGCGTGAACAGATTGCTGAAAAACGAAGGAGAGACTTG ACTCTCAGGGCTCGTGTGGCTGCTAAGACAGAAGAAAAGAAATEST: gi|208065323|gb|GD863057.1|GD863057
genomic: TTAGGAAAGAAGAGCGTGAACAGATTGCTGAAAAACGAAGGAGAGACTTGgtttgttttc ... ttcccatcagACTCTCAGGGCTCGTGTGGCTGCTAAGACAGAAGAAAAGAAAT
EST: TTAGGAAAGAAGAGCGTGAACAGATTGCTGAAAAACGAAGGAGAGACTTG ACTCTCAGGGCTCGTGTGGCTGCTAAGACAGAAGAAAAGAAATTGGAGCTGEST: gi|207807391|gb|GD777502.1|GD777502
genomic: TTAGGAAAGAAGAGCGTGAACAGATTGCTGAAAAACGAAGGAGAGACTTGgtttgttttc ... ttcccatcagACTCTCAGGGCTCGTGTGGCTGCTAAGACAGAAGAAAAGAAATTGGAGCTG
EST: TTAGGAAAGAAGAGCGTGAACAGATTGCTGAAAAACGAAGGAGAGACTTG ACTCTCAGGGCTCGTGTGGCTGCTAAGACAGAAGAAAAGAAATTGGAGCTGEST: gi|193359714|gb|FK324134.1|FK324134
genomic: TTAGGAAAGAAGAGCGTGAACAGATTGCTGAAAAACGAAGGAGAGACTTGgtttgttttc ... ttcccatcagACTCTCAGGGCTCGTGTGGCTGCTAAGACAGAAGAAAAGAAATTGGAGCTG
EST: TTAGGAAAGAAGAGCGTGAACAGATTGCTGAAAAACGAAGGAGAGACTTG ACTCTCAGGGCTCGTGTGGCTGCTAAGACAGAAGAAAAGAAATTGGAGACTEST: gi|207782944|gb|GD754529.1|GD754529
genomic: TTAGGAAAGAAGAGCGTGAACAGATTGCTGAAAAACGAAGGAGAGACTTGgtttgttttc ... ttcccatcagACTCTCAGGGCTCGTGTGGCTGCTAAGACAGAAGAAAAGAAATTGGAG-CT
EST: TTAGGAAAGAAGAGCGTGAACAGATTGCTGAAAAACGAAGGAGAGACTTG ACTCTCAGGGCTCGTGTGGCTGCTAAGACAGAAGAAAAGAAATTGGAGCTGEST: gi|208341176|gb|GE135008.1|GE135008
genomic: TTAGGAAAGAAGAGCGTGAACAGATTGCTGAAAAACGAAGGAGAGACTTGgtttgttttc ... ttcccatcagACTCTCAGGGCTCGTGTGGCTGCTAAGACAGAAGAAAAGAAATTGGAGCTG
EST: GGAGAGACTTG ACTCTCAGGGCTCGTGTGGCTNCTAAGACAGAAGAAAAGAAATTGGAGCTGEST: gi|193359311|gb|FK327532.1|FK327532
genomic: GGAGAGACTTGgtttgttttc ... ttcccatcagACTCTCAGGGCTCGTGTGGCTGCTAAGACAGAAGAAAAGAAATTGGAGCTG
EST: TTAGGAAAGAAGAGCGTGAACAGATTGCTGAAAAACGAAGGAGAGACTTG ACTCTCAGGGCTCGTGTGGCTGCTAAGACAGAAGAAAAGAAATTGGAGCEST: gi|193532237|gb|FK491945.1|FK491945
genomic: TTAGGAAAGAAGAGCGTGAACAGATTGCTGAAAAACGAAGGAGAGACTTGgtttgttttc ... ttcccatcagACTCTCAGGGCTCGTGTGGCTGCTAAGACAGAAGAAAAGAAATTGGAGC
EST: TTAGGAAAGAAGAGCGTGAACAGATTGCTGAAAAACGAAGGNGAGACTTG ACTCTCAGGGCTCGTGTGGEST: gi|208116357|gb|GD920380.1|GD920380
genomic: TTAGGAAAGAAGAGCGTGAACAGATTGCTGAAAAACGAAGGAGAGACTTGgtttgttttc ... ttcccatcagACTCTCAGGGCTCGTGTGG
EST: TTAGGAAAGAAGAGCGTGAACAGATTGCTGAAAAACGAAGGAGAGACTTG ACTCTCAGGGCTCGTGTGGCTGCTAAGACAGAAGAAAAGAAATTGGAGCTGEST: gi|207805992|gb|GD778287.1|GD778287
genomic: TTAGGAAAGAAGAGCGTGAACAGATTGCTGAAAAACGAAGGAGAGACTTGgtttgttttc ... ttcccatcagACTCTCAGGGCTCGTGTGGCTGCTAAGACAGAAGAAAAGAAATTGGAGCTG
EST: TTAGGAAAGAAGAGCGTGAACAGATTGCTGAAAAACGAAGGAGAGACTTG ACTCTCAGGGCTCGTGTGGCTGCTAAGACAGAAGAAAAGAAATTGGAGCTGEST: gi|193377032|gb|FK342669.1|FK342669
genomic: TTAGGAAAGAAGAGCGTGAACAGATTGCTGAAAAACGAAGGAGAGACTTGgtttgttttc ... ttcccatcagACTCTCAGGGCTCGTGTGGCTGCTAAGACAGAAGAAAAGAAATTGGAGCTG
EST: TTAGGAAAGAAGAGCGTGAACAGATTGCTGAAAAACGAAGGAGAGACTTG ACTCTCAGGGCTCGTGTGGCTGCTAAGACAGAAGAAAAGAAATTGGAGCTGEST: gi|208148242|gb|GD947254.1|GD947254
genomic: TTAGGAAAGAAGAGCGTGAACAGATTGCTGAAAAACGAAGGAGAGACTTGgtttgttttc ... ttcccatcagACTCTCAGGGCTCGTGTGGCTGCTAAGACAGAAGAAAAGAAATTGGAGCTG
EST: TTAGGAAAGAAGAGCGTGAACAGATTGCTGAAAAACGAAGGAGAGACTTG ACTCTCAGGGCTCGTGTGGCTGCTAAGACAGAAGAAAAGAAATTGGAGCTGEST: gi|208039782|gb|GD842486.1|GD842486
genomic: TTAGGAAAGAAGAGCGTGAACAGATTGCTGAAAAACGAAGGAGAGACTTGgtttgttttc ... ttcccatcagACTCTCAGGGCTCGTGTGGCTGCTAAGACAGAAGAAAAGAAATTGGAGCTG
EST: TTAGGAAAGAAGAGCGTGAACAGATTGCTGAAAAACGAAGGAGAGACTTG ACTCTCAGGGCTCGTGTGGCTGCTAAGACEST: gi|193396761|gb|FK362333.1|FK362333
genomic: TTAGGAAAGAAGAGCGTGAACAGATTGCTGAAAAACGAAGGAGAGACTTGgtttgttttc ... ttcccatcagACTCTCAGGGCTCGTGTGGCTGCTAAGAC
EST: TTAGGAAAGAAGAGCGTGAACAGATTGCTGAAAAACGAAGGAGAGACTTG ACTCTCAGGGCTCGTGTGGCTGCTAAGACAGAAGAAAAGAAATTGGAGCTGEST: gi|193492048|gb|FK453464.1|FK453464
genomic: TTAGGAAAGAAGAGCGTGAACAGATTGCTGAAAAACGAAGGAGAGACTTGgtttgttttc ... ttcccatcagACTCTCAGGGCTCGTGTGGCTGCTAAGACAGAAGAAAAGAAATTGGAGCTG
EST: TTAGGAAAGAAGAGCGTGAACAGATTGCTGAAAAACGAAGGAGAGACTTG ACTCTCAGGGCTCGTGTGGCTGCTAAGACAGAAGAAAAGAAATTGGAGCTG
genomic: TTAGGAAAGAAGAGCGTGAACAGATTGCTGAAAAACGAAGGAGAGACTTGgtttgttttc ... ttcccatcagACTCTCAGGGCTCGTGTGGCTGCTAAGACAGAAGAAAAGAAATTGGAGCTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCTGAGCAAAGGGCTCGTGAAGAAAGTGAAAGGCTTAGGAAAGAAGAGCGTGAACAGATTGCTGAAAAACGAAGGAGAGACTTGgtttgttttcaataataactattctttgctattcataatagatcatgctacattctgattctcattaacaattatattttttttacctattcccatcag
- - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA