1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtactaaactgaaattttatcaccttaccttcttgttcgttgattgttggtttcaacttgtatatctaactaacactttagcctgttgtccatttcagGCTTCTGACGTTCCTAATACAGATCATGTTCCAAGGGTATTGCCTAAGAATGAGGATCCAAGTTTGGTTAATAGGAACAAAAGAATGTTGGGCCAGCTTT
species | Glycine max |
transcript | GLYMA08G19640.3 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: ACCAAAGTGGATGGTCTAAGAGAGATATCAGCAATCAAAAAACTTCAAAG GCTTCTGACGTTCCTAATACTGATCATGTTCCAAGGGTATTGCCTAAGAATEST: gi|208034056|gb|GD831488.1|GD831488
genomic: ACCAAAGTGGATGGTCTAAGAGAGATATCAGCAATCAAAAAACTTCAAAGgtactaaact ... tccatttcagGCTTCTGACGTTCCTAATACAGATCATGTTCCAAGGGTATTGCCTAAGAAT
EST: AAAAACTTCAAAG GCTTCTGACGTTCCTAATACTGATCATGTTCCAAGGGTATTGCCTAAEST: gi|208176632|gb|GD979105.1|GD979105
genomic: AAAAACTTCAAAGgtactaaact ... tccatttcagGCTTCTGACGTTCCTAATACAGATCATGTTCCAAGGGTATTGCCTAA
EST: ACCAAAGTGGATGGTCTAAGAGAGATATCAGCAATCAAAAAACTTCAAAG GCTTCTGACGTTCCTAATACTGATCATGTTCCAAGGGTATTGCCTAAGAATEST: gi|208324334|gb|GE125691.1|GE125691
genomic: ACCAAAGTGGATGGTCTAAGAGAGATATCAGCAATCAAAAAACTTCAAAGgtactaaact ... tccatttcagGCTTCTGACGTTCCTAATACAGATCATGTTCCAAGGGTATTGCCTAAGAAT
EST: ACCAAAGTGGATGGTCTAAGAGAGATATCAGCAATCAAAAAACTTCAAAG GCTTCTGACGTTCCTAATACTGATCATGTTCCAAGGGTATTGCCTAAGAATEST: gi|193413949|gb|FK376543.1|FK376543
genomic: ACCAAAGTGGATGGTCTAAGAGAGATATCAGCAATCAAAAAACTTCAAAGgtactaaact ... tccatttcagGCTTCTGACGTTCCTAATACAGATCATGTTCCAAGGGTATTGCCTAAGAAT
EST: ACCAAAGTGGATGGTCTAAGAGAGATATCAGCAATC-AAAAACTTCAAAG GCTTCTGACGTTCCTAATACTGATCATGTTCCAAGGGTATTGCCTAAGAATEST: gi|120532719|gb|EH260852.1|EH260852
genomic: ACCAAAGTGGATGGTCTAAGAGAGATATCAGCAATCAAAAAACTTCAAAGgtactaaact ... tccatttcagGCTTCTGACGTTCCTAATACAGATCATGTTCCAAGGGTATTGCCTAAGAAT
EST: ACCAAAGTGGATGGTCTAAGAGAGATATCAGCAATCCAAAAACTTCAAAG GCTTCTGACGTTCCTAATACAGATCATGTTCCAAGGGTATTGCCTAAGAATEST: gi|208143447|gb|GD942465.1|GD942465
genomic: ACCAAAGTGGATGGTCTAAGAGAGATATCAGCAATCAAAAAACTTCAAAGgtactaaact ... tccatttcagGCTTCTGACGTTCCTAATACAGATCATGTTCCAAGGGTATTGCCTAAGAAT
EST: ACCAAAGTGGATGGTCTAAGAGAGATATCAGCAATCAAAAAACTTCAAAG GCTTCTGACGTTCCTAATACTGATCATGTTCCAAGGGTATTGCCTAAGAATEST: gi|207839868|gb|GD810061.1|GD810061
genomic: ACCAAAGTGGATGGTCTAAGAGAGATATCAGCAATCAAAAAACTTCAAAGgtactaaact ... tccatttcagGCTTCTGACGTTCCTAATACAGATCATGTTCCAAGGGTATTGCCTAAGAAT
EST: ATATCAGCAATC-AAAAACTTCAAAG GCTTCTGACGTTCCTAATACTGATCATGTTCCAAGGGTATTGCCTAAGAATEST: gi|208118695|gb|GD917902.1|GD917902
genomic: ATATCAGCAATCAAAAAACTTCAAAGgtactaaact ... tccatttcagGCTTCTGACGTTCCTAATACAGATCATGTTCCAAGGGTATTGCCTAAGAAT
EST: ACCAAAGTGGATGGTCTAAGAGAGATATCAGCAATCAAAAAACTTCAAAG GCTTCTGACGTTCCTAATACTGATCAT
genomic: ACCAAAGTGGATGGTCTAAGAGAGATATCAGCAATCAAAAAACTTCAAAGgtactaaact ... tccatttcagGCTTCTGACGTTCCTAATACAGATCAT
ttgttggtttcaacttgtatatctaactaacactttagcctgttgtccatttcagGCTTCTGACGTTCCTAATACAGATCATGTTCCAAGGGTATTGCCTAAGAATGAGGATCCAAGTTTGGTTAATAGGAACAAAAGAATGTTGGGCCAGCTTT
aactaac putative branch site (score: 1)
tccatttc putative PPT
tatatctaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtactaaactgaaattttatcaccttaccttcttgttcgttgattgttggtttcaacttgtatatctaactaacactttagcctgttgtccatttcagGCTTCTGACGTTCCTAATACAGATCATGTTCCAAGGGTATTGCCTAAGAATGAGGATCCAAGTTTGGTTAATAGGAACAAAAGAATGTTGGGCCAGCTTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA