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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcctctctctctctgcatattcatatctgtgtttatgtgttgaaatcgtttcttatgtttatttgttacttttgtagATTTCGGAAAGGCTTCGAGATCCTCGAGGTCTTCGCAGAGGTGCCTTGCCGGGTCCTCCTGCTCTCCGCACTAACGGT

Basic information

species Glycine max
transcript GLYMA08G19640.3
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193477758|gb|FK442305.1|FK442305
EST:     AGCAAGAACTCCGCAACGAGATCGATGAGCTTCTTCGCCAACAGCGCGAG                         ATTTCGGAAAGGCTTCGAGATCCTCGAGGTCTTCGCAGAGGTGCCTTGCCG
genomic: AGCAAGAACTCCGCAACGAGATCGATGAGCTTCTTCGCCAACAGCGCGAGgtcctctctc ... acttttgtagATTTCGGAAAGGCTTCGAGATCCTCGAGGTCTTCGCAGAGGTGCCTTGCCG
EST: gi|120532719|gb|EH260852.1|EH260852
EST:     AGCAAGAACTCCGCAACGAGATCGATGAGCTTCTTCGCCAACAGCGCGAG                         ATTTCGGAAAGGCTTCGAGATCCTCGAGGTCTTCGCAGAGGTGCCTTGCCG
genomic: AGCAAGAACTCCGCAACGAGATCGATGAGCTTCTTCGCCAACAGCGCGAGgtcctctctc ... acttttgtagATTTCGGAAAGGCTTCGAGATCCTCGAGGTCTTCGCAGAGGTGCCTTGCCG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atatctgtgtttatgtgttgaaatcgtttcttatgtttatttgttacttttgtagATTTCGGAAAGGCTTCGAGATCCTCGAGGTCTTCGCAGAGGTGCCTTGCCGGGTCCTCCTGCTCTCCGCACTAACGGT
                                           ttactttt  CT-rich tract
                              ttatgtttatttgtta  TA-rich tract