1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
AAATTCCGAAAGGAAGACATGCAACTCTCAGGAACAGAGGCATATATGCGAAGATCTAATTCCTTGCAAAGAgtaagttcttgtccattactattgccacttgtgcctttaaatataatatgtccttaaaaattttcagtcaatccaccttattcataaggttatgtagatt...
species | Glycine max |
transcript | GLYMA08G19640.3 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: AACTCTCAGGAACAGAGGCATATATGCGAAGATCTAATTCCTTGCAAAGA GCTGAGCAAAGGGCTCGTGAAGAAAGTGAAAGGCTTAGGAAAGAAGAGCGTEST: gi|208113975|gb|GD909780.1|GD909780
genomic: AACTCTCAGGAACAGAGGCATATATGCGAAGATCTAATTCCTTGCAAAGAgtaagttctt ... taattcctagGCTGAGCAAAGGGCTCGTGAAGAAAGTGAAAGGCTTAGGAAAGAAGAGCGT
EST: AACTCTCAGGAACAGAGGCATATATGCGAAGATCTAATTCCTTGCAAAGA GCTGAGCAAAGGGCTCGTGAAGAAAGTGAAAGGCTTAGGAAAGAAGAGCGTEST: gi|208065323|gb|GD863057.1|GD863057
genomic: AACTCTCAGGAACAGAGGCATATATGCGAAGATCTAATTCCTTGCAAAGAgtaagttctt ... taattcctagGCTGAGCAAAGGGCTCGTGAAGAAAGTGAAAGGCTTAGGAAAGAAGAGCGT
EST: AACTCTCAGGAACAGAGGCATATATGCGAAGATCTAATTCCTTGCAAAGA GCTGAGCAAAGGGCTCGTGAAGAAAGTGAAAGGCTTAGGAAAGAAGAGCGTEST: gi|208176632|gb|GD979105.1|GD979105
genomic: AACTCTCAGGAACAGAGGCATATATGCGAAGATCTAATTCCTTGCAAAGAgtaagttctt ... taattcctagGCTGAGCAAAGGGCTCGTGAAGAAAGTGAAAGGCTTAGGAAAGAAGAGCGT
EST: AACTCTCAGGAACAGAGGCATATATGCGAAGATCTAATTCCTTGCAAAGA GCTGAGCAAAGGEST: gi|207807391|gb|GD777502.1|GD777502
genomic: AACTCTCAGGAACAGAGGCATATATGCGAAGATCTAATTCCTTGCAAAGAgtaagttctt ... taattcctagGCTGAGCAAAGG
EST: AACTCTCAGGAACAGAGGCATATATGCGAAGATCTAATTCCTTGCAAAGA GCTGAGCAAAGGGCTCGTGAAGAAAGTGAAAGGCTTAGGAAAGAAGAGCGTEST: gi|193532237|gb|FK491945.1|FK491945
genomic: AACTCTCAGGAACAGAGGCATATATGCGAAGATCTAATTCCTTGCAAAGAgtaagttctt ... taattcctagGCTGAGCAAAGGGCTCGTGAAGAAAGTGAAAGGCTTAGGAAAGAAGAGCGT
EST: AACTCTCAGGAACAGAGGCATATATGCGAAGATCTAATTCCTTGCAAAGA GCTGAGCAAAGGGCTCGTGAAGAAAGTGAAAGGCTTAGGAAAGAAGAGCGTEST: gi|208116357|gb|GD920380.1|GD920380
genomic: AACTCTCAGGAACAGAGGCATATATGCGAAGATCTAATTCCTTGCAAAGAgtaagttctt ... taattcctagGCTGAGCAAAGGGCTCGTGAAGAAAGTGAAAGGCTTAGGAAAGAAGAGCGT
EST: CTCAGGAACAGAGGCATATATGCGAAGATCTAATTCCTTGCAAAGA GCTGAGCAAAGGGCTCGTGAAGAAAGTGAAAGGCTTAGGAAAGAAGAGCGTEST: gi|207805992|gb|GD778287.1|GD778287
genomic: CTCAGGAACAGAGGCATATATGCGAAGATCTAATTCCTTGCAAAGAgtaagttctt ... taattcctagGCTGAGCAAAGGGCTCGTGAAGAAAGTGAAAGGCTTAGGAAAGAAGAGCGT
EST: AACTCTCAGGAACAGAGGCATATATGCGAAGATCTAATTCCTTGCAAAGA GCTGAGCAAAGGGCTCGTGAAGAAAGTGAAAGGCTTAGGAAAGAAGAGCGTEST: gi|193396761|gb|FK362333.1|FK362333
genomic: AACTCTCAGGAACAGAGGCATATATGCGAAGATCTAATTCCTTGCAAAGAgtaagttctt ... taattcctagGCTGAGCAAAGGGCTCGTGAAGAAAGTGAAAGGCTTAGGAAAGAAGAGCGT
EST: AACTCTCAGGAACAGAGGCATATATGCGAAGATCTAATTCCTTGCAAAGA GCTGAGCAAAGGGCTCGTGAAGAAAGTGAAAGGCTTAGGAAAGAAGAGCGTEST: gi|193492048|gb|FK453464.1|FK453464
genomic: AACTCTCAGGAACAGAGGCATATATGCGAAGATCTAATTCCTTGCAAAGAgtaagttctt ... taattcctagGCTGAGCAAAGGGCTCGTGAAGAAAGTGAAAGGCTTAGGAAAGAAGAGCGT
EST: AACAGAGGCATATATGCGAAGATCTAATTCCTTGCAAAGA GCTGAGCAAAGGGCTCGTGAAGAAAGTGAAAGGCTTAGGAAAGAAGAGCGT
genomic: AACAGAGGCATATATGCGAAGATCTAATTCCTTGCAAAGAgtaagttctt ... taattcctagGCTGAGCAAAGGGCTCGTGAAGAAAGTGAAAGGCTTAGGAAAGAAGAGCGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAATTCCGAAAGGAAGACATGCAACTCTCAGGAACAGAGGCATATATGCGAAGATCTAATTCCTTGCAAAGAgtaagttcttgtccattactattgccacttgtgcctttaaatataatatgtccttaaaaattttcagtcaatccaccttattcataaggttatgtagatt
- - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG