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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTCATAAAAAAACTTGAAGAAGCTGGATTTTCGCATGACAGATTCTACATCCATTGTGATGGGGCTTTGTTTGGTCTCATGATGCCTTTCGTGAAACGAgtatgtgcaaatgttactataaattgtttaacttgtataagatataatgatgaaattttcatctgctatcttcatttgttctattagaaaactttgatgt...

Basic information

species Glycine max
transcript GLYMA08G19360.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G19360.1 (Glycine max), 5'ss of exon 5
lower sequence: EFJ22493 (Selaginella moellendorffii), 5'ss of exon 4
GGTCATAAAAAAACTTGAAGAAGCTGGATTTTCGCATGACAGATTCTACATCCATTGTGATGGGGCTTTGTTTGGTCTCATGATGCCTTTCGTGAAACGAgtatgtgcaaatgttactataaattgtttaacttgtataagatataatgatgaaattttcatctgctatcttcatttgttctattagaaaactttgatgt
 || || |||| ||| |||||   ||| || || || ||| | ||||||||||| |||||||| ||| | || || ||||||||||| ||||||||  ||||| |  | |     | |  |  || ||    || | ||||    || |  |   ||||  ||| || ||                              
TGTAATTAAAACACTGGAAGACTGTGGCTTCTCCCAGGACCGCTTCTACATCCACTGTGATGGTGCTCTCTTCGGGCTCATGATGCCGTTCGTGAAGAGAgtaagctccacaa--agttcatgttcttcgtgttct-taag-cgcaa-ggcgtgttttttctcttctttccag---------------------------

upper sequence: GLYMA08G19360.1 (Glycine max), 5'ss of exon 5
lower sequence: EFJ11717 (Selaginella moellendorffii), 5'ss of exon 4
GGTCATAAAAAAACTTGAAGAAGCTGGATTTTCGCATGACAGATTCTACATCCATTGTGATGGGGCTTTGTTTGGTCTCATGATGCCTTTCGTGAAACGAgtatgtgcaaatgttactataaattgtttaacttgtataagatataatgatgaaattttcatctgctatcttcatttgttctattagaaaactttgatgt
 || || | || ||| |||||   ||| || || || ||| | ||||||||||| |||||||| ||| | || || ||||||||||| ||||||||  ||||| |  | |        | |  | || |   | || |     |     | |    |||  |||  | | | ||                          
TGTGATTAGAACACTGGAAGACTGTGGCTTCTCCCAGGACCGCTTCTACATCCACTGTGATGGTGCTCTCTTCGGGCTCATGATGCCGTTCGTGAAGAGAgtaagctcca-------caaagttcgtgttcttcgtgttcttaagcgcaaggcgtgttttttctcttctttccag-------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|20449110|gb|BQ253234.1|BQ253234
EST:     TCCATTGTGATGGGGCTTTGTTTGGTCTCATGATGCCTTTCGTGAAACGA                         GCTTCAAAAGTTACTTTT
genomic: TCCATTGTGATGGGGCTTTGTTTGGTCTCATGATGCCTTTCGTGAAACGAgtatgtgcaa ... ttgctttcagGCTCCAAAAGTTACTTTT
EST: gi|22931125|gb|BU548264.1|BU548264
EST:     TCCATTGTGATGGGGCTTTGTTTGGTCTCATGATGCCTTTCGTGAAACGA                         GCTCCAAAAGTTACTTTTAAGAAGCCTATTGGCAGTGTTAGTGTTTCTGGC
genomic: TCCATTGTGATGGGGCTTTGTTTGGTCTCATGATGCCTTTCGTGAAACGAgtatgtgcaa ... ttgctttcagGCTCCAAAAGTTACTTTTAAGAAGCCTGTTGGCAGTGTTAGTGTTTCTGGC
EST: gi|192311121|gb|FK004460.1|FK004460
EST:     TCCATTGTGATGGGGCTTTGTTTGGTCTCATGATGCCTTTCGTGAAACGA                         GCTCCAAAAGTTACTTTTAAGAAGCCTGTTGGCAGTGTTAGTGTTTCTGGC
genomic: TCCATTGTGATGGGGCTTTGTTTGGTCTCATGATGCCTTTCGTGAAACGAgtatgtgcaa ... ttgctttcagGCTCCAAAAGTTACTTTTAAGAAGCCTGTTGGCAGTGTTAGTGTTTCTGGC
EST: gi|27446086|gb|CA953209.1|CA953209
EST:     TCCATTGTGATGGGGCTTTGTTTGGTCTCATGATGCCTTTCGTGAAACGA                         GCTCCAAAAGTTACTTTTAAGAAGCCTGTTGGCAGTGTTAGTGTTTCTGGC
genomic: TCCATTGTGATGGGGCTTTGTTTGGTCTCATGATGCCTTTCGTGAAACGAgtatgtgcaa ... ttgctttcagGCTCCAAAAGTTACTTTTAAGAAGCCTGTTGGCAGTGTTAGTGTTTCTGGC
EST: gi|13252285|gb|BG363188.1|BG363188
EST:     TCCATTGTGATGGGGCTTTGTTTGGTCTCATGATGCCTTTCGTGAAACGA                         GCTCCAAAAGTTACTTTTAAGAAGCCTGTTGGCAGTGTTAGTGTTTCTGGC
genomic: TCCATTGTGATGGGGCTTTGTTTGGTCTCATGATGCCTTTCGTGAAACGAgtatgtgcaa ... ttgctttcagGCTCCAAAAGTTACTTTTAAGAAGCCTGTTGGCAGTGTTAGTGTTTCTGGC
EST: gi|298192239|gb|HO036321.1|HO036321
EST:     TCCATTGTGATGGGGCTTTGTTTGGTCTCATGATGCCTTTCGTGAAACGA                         GCTCCAAAAGTTACTTTTAAGAAGCCTGTTGGCAGTGTTAGTGTTTCTGGC
genomic: TCCATTGTGATGGGGCTTTGTTTGGTCTCATGATGCCTTTCGTGAAACGAgtatgtgcaa ... ttgctttcagGCTCCAAAAGTTACTTTTAAGAAGCCTGTTGGCAGTGTTAGTGTTTCTGGC
EST: gi|298192247|gb|HO036329.1|HO036329
EST:     TCCATTGTGATGGGGCTTTGTTTGGTCTCATGATGCCTTTCGTGAAACGA                         GCTCCAAAAGTTACTTTTAAGAAGCCTGTTGGCAGTGTTAGTGTTTCTGGC
genomic: TCCATTGTGATGGGGCTTTGTTTGGTCTCATGATGCCTTTCGTGAAACGAgtatgtgcaa ... ttgctttcagGCTCCAAAAGTTACTTTTAAGAAGCCTGTTGGCAGTGTTAGTGTTTCTGGC
EST: gi|9984124|gb|BE658176.1|BE658176
EST:     TCCATTGTGATGGGGCTTTGTTTGGTCTCATGATGCCTTTCGTGAAACGA                         GCTCCAAAAGTTACTNNNAAGAAGCCTGTTGGCAGTGTTAGTGTTTCTGGC
genomic: TCCATTGTGATGGGGCTTTGTTTGGTCTCATGATGCCTTTCGTGAAACGAgtatgtgcaa ... ttgctttcagGCTCCAAAAGTTACTTTTAAGAAGCCTGTTGGCAGTGTTAGTGTTTCTGGC
EST: gi|16106370|gb|BI894110.1|BI894110
EST:     TCCATTGTGATGGGGCTTTGTTTGGTCTCATGATGCCTTTCGTGAAACGA                         GCTCCAAAAGTTACTTTTAAGAAGCCTGTTGGCAGTGTTAGTGTTTCTGGC
genomic: TCCATTGTGATGGGGCTTTGTTTGGTCTCATGATGCCTTTCGTGAAACGAgtatgtgcaa ... ttgctttcagGCTCCAAAAGTTACTTTTAAGAAGCCTGTTGGCAGTGTTAGTGTTTCTGGC
EST: gi|23731905|gb|BU764099.1|BU764099
EST:     TCCATTGTGATGGGGCTTTGTTTGGTCTCATGATGCCTTTCGTGAAACGA                         GCTCCAAAAGTTACTTTTAAGAAGCCTGTTGGCAGTGTTAGTGTTTCTGGC
genomic: TCCATTGTGATGGGGCTTTGTTTGGTCTCATGATGCCTTTCGTGAAACGAgtatgtgcaa ... ttgctttcagGCTCCAAAAGTTACTTTTAAGAAGCCTGTTGGCAGTGTTAGTGTTTCTGGC
EST: gi|13563443|gb|BG551589.1|BG551589
EST:     TCCATTGTGATGGGGCTTTGTTTGGTCTCATGATGCCTTTCGTGAAACGA                         GCTCCAAAAGTTACTTTTAAGAAGCCTGTTGGCAGTGTTAGTGTTTCTGGC
genomic: TCCATTGTGATGGGGCTTTGTTTGGTCTCATGATGCCTTTCGTGAAACGAgtatgtgcaa ... ttgctttcagGCTCCAAAAGTTACTTTTAAGAAGCCTGTTGGCAGTGTTAGTGTTTCTGGC
EST: gi|298188779|gb|HO035472.1|HO035472
EST:     GGGGCTTTGTTTGGTCTCATGATGCCTTTCGTGAAACGA                         GCTCCAAAAGTTACTTTTAAGAAGCCTGTTGGCAGTGTTAGTGTTTCTGGC
genomic: GGGGCTTTGTTTGGTCTCATGATGCCTTTCGTGAAACGAgtatgtgcaa ... ttgctttcagGCTCCAAAAGTTACTTTTAAGAAGCCTGTTGGCAGTGTTAGTGTTTCTGGC
EST: gi|151407642|gb|EV277457.1|EV277457
EST:     TCCATTGTGATGGGGCTTTGTTTGGTCTCATGATGCCTTTCGTGAAACGA                         GCTCCAAAAGTTACTTTTAAGAAGCCTGTTGGCAGTGTTAGTGTTTCTGGC
genomic: TCCATTGTGATGGGGCTTTGTTTGGTCTCATGATGCCTTTCGTGAAACGAgtatgtgcaa ... ttgctttcagGCTCCAAAAGTTACTTTTAAGAAGCCTGTTGGCAGTGTTAGTGTTTCTGGC
EST: gi|27426440|gb|CA937960.1|CA937960
EST:     TCCATTGTGATGGGGCTTTGTTTGGTCTCATGATGCCTTTCGTGAAACGA                         GCTCCAAAAGTTACTTTTAAGAAGCCTGTTGGCAGTGTTAGTGTTTCTGGC
genomic: TCCATTGTGATGGGGCTTTGTTTGGTCTCATGATGCCTTTCGTGAAACGAgtatgtgcaa ... ttgctttcagGCTCCAAAAGTTACTTTTAAGAAGCCTGTTGGCAGTGTTAGTGTTTCTGGC
EST: gi|192311122|gb|FK004461.1|FK004461
EST:     TCCATTGTGATGGGGCTTTGTTTGGTCTCATGATGCCTTTCGTGAAACGA                         GCTCCAAAAGTTACTTTTAAGAAGCCTGTTGGCAGTGTTAGTGTTTCTGGC
genomic: TCCATTGTGATGGGGCTTTGTTTGGTCTCATGATGCCTTTCGTGAAACGAgtatgtgcaa ... ttgctttcagGCTCCAAAAGTTACTTTTAAGAAGCCTGTTGGCAGTGTTAGTGTTTCTGGC