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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGATTGGTTTGCCCGATTGTGGGAACTGGAGAAAAATGAGTACTGGGGCTATATAACAAACTGTGGTACAGAAGGCAATCTCCATGGCATCCTAGTTGGgttagtttcagctagtcctatctagttcaacttctaattttgttaagcttgtaaagaacatctaatatggttttgtgacttgtgcag

Basic information

species Glycine max
transcript GLYMA08G19360.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G19360.1 (Glycine max), 5'ss of exon 3
lower sequence: PP1S47_119V6.1 (Physcomitrella patens), 5'ss of exon 2
TGGATTGGTTTGCCCGATTGTGGGAACTGGAGAAAAATGAGTACTGGGGCTATATAACAAACTGTGGTACAGAAGGCAATCTCCATGGCATCCTAGTTGGgttagtttcagctagtcctat-ctagttcaacttctaattttgt---------taagcttgtaaaga-acatctaatatggttttgtgacttgtgcag--
|||| ||||||||| | |||||||| ||||||||  | ||||||||||||||||| || ||||||||||| ||||| |||||||| ||||| || || |||||||  ||   ||   | |  | |  || | | | ||||  |          ||  ||| || |     |||   ||||    || ||  | |      
TGGACTGGTTTGCCAGGTTGTGGGAGCTGGAGAAGGACGAGTACTGGGGCTATATCACCAACTGTGGTACTGAAGGAAATCTCCACGGCATTCTCGTCGGgttagcgtcttttaccacaacacaaaatccattacaaattcggcgctaacgtgtatacttttatatttggatcctgtatgcacctgagatctttcttccc

upper sequence: GLYMA08G19360.1 (Glycine max), 5'ss of exon 3
lower sequence: PP1S13_150V6.1 (Physcomitrella patens), 5'ss of exon 2
TGGATTGGTTTGCCCGATTGTGGGAACTGGAGAAAAATGAGTACTGGGGCTATATAACAAACTGTGGTACAGAAGGCAATCTCCATGGCATCCTAGTTGGgttagtttcagct--------agtcctatctagttcaacttctaattttgttaagcttgtaaagaacatctaatatggtt-ttgtgacttgtgcag------------------------------------------------------------------------------------
|||||||||| ||| || ||||||| || |||||| | ||||||||||| || || || |||||||| |||||||| || ||||| |||||||| ||||||| || | | | |        ||       || || |  ||  || |||||   |||  |   |||| |  |||||| |   |    |   ||  |                                                                                    
TGGATTGGTTCGCCAGACTGTGGGAGCTTGAGAAAGAGGAGTACTGGGGATACATCACCAACTGTGGCACAGAAGGAAACCTCCACGGCATCCTTGTTGGgtgagctactgttcacattccagattcgaatattttagttttgaaatttgtcgcgctatttttgaac-tacaatatgttgactaccgcacctgtggcgtccctgactgcctcctggttttaaggagtgctgctggtcatactgtgagaagaatttaatctggaaccacacgggcttgcag

upper sequence: GLYMA08G19360.1 (Glycine max), 5'ss of exon 3
lower sequence: EFJ11717 (Selaginella moellendorffii), 5'ss of exon 2
TGGATTGGTTTGCCCGATTGTGGGAACTGGAGAAAAATGAGTACTGGGGCTATATAACAAACTGTGGTACAGAAGGCAATCTCCATGGCATCCTAGTTGGgttagtttcagctagtcctatctagttcaacttctaattttgttaagcttgtaaagaacatctaatatggttttgtgacttgtgcag
|||||||||||||  |||||||||| |||||||| || ||||||||||| ||||| ||||||||||| || || || ||||| || ||| |  | || |||| |  ||       |||| |||  ||||    ||  || |    |  |||  |      | |   |  |                 
TGGATTGGTTTGCGAGATTGTGGGAGCTGGAGAAGAACGAGTACTGGGGATATATCACAAACTGTGGGACGGAGGGAAATCTTCACGGCTTGTTGGTCGGgtaaacttatttctttcctttcttcttcacggacttgttctt---actttgatacttcttttttccacag-----------------

upper sequence: GLYMA08G19360.1 (Glycine max), 5'ss of exon 3
lower sequence: EFJ22493 (Selaginella moellendorffii), 5'ss of exon 2
TGGATTGGTTTGCCCGATTGTGGGAACTGGAGAAAAATGAGTACTGGGGCTATATAACAAACTGTGGTACAGAAGGCAATCTCCATGGCATCCTAGTTGGgttagtttcagctagtcctatctagttcaacttctaattttgttaagcttgtaaagaacatctaatatggttttgtgacttgtgcag
|||||||||||||  |||||||||| |||||||| || ||||||||||| ||||| ||||||||||| || || || ||||| || ||| |  | || |||| |  ||       |||| |||  ||||    ||  || |    |  |||  |      | |   |  |                 
TGGATTGGTTTGCGAGATTGTGGGAGCTGGAGAAGAACGAGTACTGGGGATATATCACAAACTGTGGGACGGAGGGAAATCTTCACGGCTTGTTGGTCGGgtaaacttatttctttcctttcttcttcacggacttgttctt---actttggtacttctttttcccacag-----------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|20449110|gb|BQ253234.1|BQ253234
EST:     TATATAACAAACTGTGGTACAGAAGGCAATCTCCATGGCATCCTAGTTGG                         GAGAGAGGTCTTTCCAGATGGGATTTTGTATGCTTCACGGGAGTCACATTA
genomic: TATATAACAAACTGTGGTACAGAAGGCAATCTCCATGGCATCCTAGTTGGgttagtttca ... acttgtgcagGAGAGAGGTCTTTCCAGATGGGATTTTGTATGCTTCACGGGAGTCACATTA
EST: gi|13252285|gb|BG363188.1|BG363188
EST:     TATATAACAAACTGTGGTACAGAAGGCAATCTCCATGGCATCCTAGTTGG                         GAGAGAGGTCTTTCCAGATGGGATTTTGTATGCTTCACGGGAGTCACATTA
genomic: TATATAACAAACTGTGGTACAGAAGGCAATCTCCATGGCATCCTAGTTGGgttagtttca ... acttgtgcagGAGAGAGGTCTTTCCAGATGGGATTTTGTATGCTTCACGGGAGTCACATTA
EST: gi|24136481|gb|BU926991.1|BU926991
EST:     TATATAACAAACTGTGGTACAGAAGGCAATCTCCATGGCATCCTAGTTGG                         GAGAGAGGTCTTTCCAGATGGGATTTTGTATGCTTCACGGGAGTCACATTA
genomic: TATATAACAAACTGTGGTACAGAAGGCAATCTCCATGGCATCCTAGTTGGgttagtttca ... acttgtgcagGAGAGAGGTCTTTCCAGATGGGATTTTGTATGCTTCACGGGAGTCACATTA
EST: gi|18040607|gb|BM308901.1|BM308901
EST:     TATATAACAAACTGTGGTACAGAAGGCAATCTCCATGGCATCCTAGTTGG                         GAGAGAGGTCTTTCCAGATGGGATTTTGTATGCTTCACGGGAGTCACATTA
genomic: TATATAACAAACTGTGGTACAGAAGGCAATCTCCATGGCATCCTAGTTGGgttagtttca ... acttgtgcagGAGAGAGGTCTTTCCAGATGGGATTTTGTATGCTTCACGGGAGTCACATTA
EST: gi|5126581|gb|AI748317.1|AI748317
EST:     TATATAACAAACTGTGGTACAGAAGGCAATCTCCATGGCATCCTAGTTGG                         GAGAGAGGTCTTTCCAGATGGGATTTTGTATGCTTCACGGGAGTCACATTA
genomic: TATATAACAAACTGTGGTACAGAAGGCAATCTCCATGGCATCCTAGTTGGgttagtttca ... acttgtgcagGAGAGAGGTCTTTCCAGATGGGATTTTGTATGCTTCACGGGAGTCACATTA
EST: gi|23731905|gb|BU764099.1|BU764099
EST:     TATATAACAAACTGTGGTACAGAAGGCAATCTCCATGGCATCCTAGTTGG                         GAGAGAGGTCTTTCCAGATGGGATTTTGTATGCTTCACGGGAGTCACATTA
genomic: TATATAACAAACTGTGGTACAGAAGGCAATCTCCATGGCATCCTAGTTGGgttagtttca ... acttgtgcagGAGAGAGGTCTTTCCAGATGGGATTTTGTATGCTTCACGGGAGTCACATTA