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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTCTTTGCCCCGCTTTATTGCATCTCAGAGGCCAATTCTTTCGCCGCTTCTTCTCTCTTTCCAACGCTTCCCCCTGTGgttcgttagcctctcttcttcctattctttcagatctatcatcttttcgtaattcgtgattttaatgcatctcattgcttaggtcgcagttctctgaatt...

Basic information

species Glycine max
transcript GLYMA08G19360.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|9986778|gb|BE660886.1|BE660886
EST:     AGGCCAATTCTTTCGCCGCTTCTTCTCTCTTTCCAACGCTTCCCCCTGTG                         GTGTTCTCGTGTTGCTGGTAACAATATGGTTGTTGACGCTTTGAATGAGGA
genomic: AGGCCAATTCTTTCGCCGCTTCTTCTCTCTTTCCAACGCTTCCCCCTGTGgttcgttagc ... tttatgtcagGTGTTCTCGTGTTGCTGGTAACAATATGGTTGTTGACGCTTTGAATGAGGA
EST: gi|213598026|gb|DB972214.1|DB972214
EST:     GCTTCTTCTCTCTTTCCAACGCTTCCCCCTGTG                         GTGTTCTCGTGTTGCTGGTAACAATATGGTTGTTGACGCTTTGAATGAGGA
genomic: GCTTCTTCTCTCTTTCCAACGCTTCCCCCTGTGgttcgttagc ... tttatgtcagGTGTTCTCGTGTTGCTGGTAACAATATGGTTGTTGACGCTTTGAATGAGGA
EST: gi|209705370|gb|BW678499.1|BW678499
EST:     AGGCCAATTCTTTCGCCGCTTCTTCTCTCTTTCCAACGCTTCCCCCTGTG                         GTGTTCTCGTGTTGCTGGTAACAATATGGTTGTTGACGCTTTGAATGAGGA
genomic: AGGCCAATTCTTTCGCCGCTTCTTCTCTCTTTCCAACGCTTCCCCCTGTGgttcgttagc ... tttatgtcagGTGTTCTCGTGTTGCTGGTAACAATATGGTTGTTGACGCTTTGAATGAGGA
EST: gi|209724512|gb|BW669554.1|BW669554
EST:     AGGCCAATTCTTTCGCCGCTTCTTCTCTCTTTCCAACGCTTCCCCCTGTG                         GTGTTCTCGTGTTGCTGGTAACAATATGGTTGTTGACGCTTTGAATGAGGA
genomic: AGGCCAATTCTTTCGCCGCTTCTTCTCTCTTTCCAACGCTTCCCCCTGTGgttcgttagc ... tttatgtcagGTGTTCTCGTGTTGCTGGTAACAATATGGTTGTTGACGCTTTGAATGAGGA
EST: gi|19347409|gb|BM892289.1|BM892289
EST:     CCAATTCTTTCGCCGCTTCTTCTCTCTTTCCAACGCTTCCCCCTGTG                         GTGTTCTCGTGTTGCTGGTAACAATATGGTTGTTGACGCTTTGAATGAGGA
genomic: CCAATTCTTTCGCCGCTTCTTCTCTCTTTCCAACGCTTCCCCCTGTGgttcgttagc ... tttatgtcagGTGTTCTCGTGTTGCTGGTAACAATATGGTTGTTGACGCTTTGAATGAGGA
EST: gi|213601349|gb|DB968693.1|DB968693
EST:     AGGCCAATTCTTTCGCCGCTTCTTCTCTCTTTCCAACGCTTCCCCCTGTG                         GTGTTCTCGTGTTGCTGGTAACAATATGGTTGTTGACGCTTTGAATGAGGA
genomic: AGGCCAATTCTTTCGCCGCTTCTTCTCTCTTTCCAACGCTTCCCCCTGTGgttcgttagc ... tttatgtcagGTGTTCTCGTGTTGCTGGTAACAATATGGTTGTTGACGCTTTGAATGAGGA
EST: gi|151397511|gb|EV267384.1|EV267384
EST:     AGGCCAATTCTTTCGCCGCTTCTTCTCTCTTTCCAACGCTTCCCCCTGTG                         GTGTTCTCGTGTTGCTGGTAACAATATGGTTGTTGACGCTTTGAATGAGGA
genomic: AGGCCAATTCTTTCGCCGCTTCTTCTCTCTTTCCAACGCTTCCCCCTGTGgttcgttagc ... tttatgtcagGTGTTCTCGTGTTGCTGGTAACAATATGGTTGTTGACGCTTTGAATGAGGA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CTCTTTGCCCCGCTTTATTGCATCTCAGAGGCCAATTCTTTCGCCGCTTCTTCTCTCTTTCCAACGCTTCCCCCTGTGgttcgttagcctctcttcttcctattctttcagatctatcatcttttcgtaattcgtgattttaatgcatctcattgcttaggtcgcagttctctgaatt

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctctcttc