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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gcaagtttcttcatcattgtttctctctctcgcatcccatgtctcccctcctcttcattttgttgattctagctcatccaactgaaacaattgcagGTACAACTGTGAAAGGGGCTGTGGATGATCTTGATCTGGTCATAAAAAAACTTGAAGAAGCTGGATTTTCGCATGACAGATTCTACATCCATTGTGATGG

Basic information

species Glycine max
transcript GLYMA08G19360.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|20449110|gb|BQ253234.1|BQ253234
EST:     CAAGCTTCTTAGTCACCAGGATAAGCCAGCAATTATAAATGTGAACATAG                         GTACAACTGTGAAAGGGGCTGTGGATGATCTTGATCTGGTCATNNNNNNNC
genomic: CAAGCTTCTTAGTCACCAGGATAAGCCAGCAATTATAAATGTGAACATAGgcaagtttct ... acaattgcagGTACAACTGTGAAAGGGGCTGTGGATGATCTTGATCTGGTCATAAAAAAAC
EST: gi|192311121|gb|FK004460.1|FK004460
EST:     CAAGCTTCTTAGTCACCAGGATAAGCCAGCAATTATAAATGTGAACATAG                         GTACAACTGTGAAAGGGGCTGTGGATGATCTTGATCTGGTCATNNNNNNNC
genomic: CAAGCTTCTTAGTCACCAGGATAAGCCAGCAATTATAAATGTGAACATAGgcaagtttct ... acaattgcagGTACAACTGTGAAAGGGGCTGTGGATGATCTTGATCTGGTCATAAAAAAAC
EST: gi|27446086|gb|CA953209.1|CA953209
EST:     CAAGCTTCTTAGTCACCAGGATAAGCCAGCAATTATAAATGTGAACATAG                         GTACAACTGTGAAAGGGGCTGTGGATGATCTTGATCTGGTCATNNNNNNNC
genomic: CAAGCTTCTTAGTCACCAGGATAAGCCAGCAATTATAAATGTGAACATAGgcaagtttct ... acaattgcagGTACAACTGTGAAAGGGGCTGTGGATGATCTTGATCTGGTCATAAAAAAAC
EST: gi|13252285|gb|BG363188.1|BG363188
EST:     CAAGCTTCTTAGTCACCAGGATAAGCCAGCAATTATAAATGTGAACATAG                         GTACAACTGTGAAAGGGGCTGTGGATGATCTTGATCTGGTCATNNNNNNNC
genomic: CAAGCTTCTTAGTCACCAGGATAAGCCAGCAATTATAAATGTGAACATAGgcaagtttct ... acaattgcagGTACAACTGTGAAAGGGGCTGTGGATGATCTTGATCTGGTCATAAAAAAAC
EST: gi|298192239|gb|HO036321.1|HO036321
EST:     CAAGCTTCTTAGTCACCAGGATAAGCCAGCAATTATAAATGTGAACATAG                         GTACAACTGTGAAAGGGGCTGTGGATGATCTTGATCTGGTCATNNNNNNNC
genomic: CAAGCTTCTTAGTCACCAGGATAAGCCAGCAATTATAAATGTGAACATAGgcaagtttct ... acaattgcagGTACAACTGTGAAAGGGGCTGTGGATGATCTTGATCTGGTCATAAAAAAAC
EST: gi|298192247|gb|HO036329.1|HO036329
EST:     CAAGCTTCTTAGTCACCAGGATAAGCCAGCAATTATAAATGTGAACATAG                         GTACAACTGTGAAAGGGGCTGTGGATGATCTTGATCTGGTCATNNNNNNNC
genomic: CAAGCTTCTTAGTCACCAGGATAAGCCAGCAATTATAAATGTGAACATAGgcaagtttct ... acaattgcagGTACAACTGTGAAAGGGGCTGTGGATGATCTTGATCTGGTCATAAAAAAAC
EST: gi|16106370|gb|BI894110.1|BI894110
EST:     CAAGCTTCTTAGTCACCAGGATAAGCCAGCAATTATAAATGTGAACATAG                         GTACAACTGTGAAAGGGGCTGTGGATGATCTTGATCTGGTCATNNNNNNNC
genomic: CAAGCTTCTTAGTCACCAGGATAAGCCAGCAATTATAAATGTGAACATAGgcaagtttct ... acaattgcagGTACAACTGTGAAAGGGGCTGTGGATGATCTTGATCTGGTCATAAAAAAAC
EST: gi|23731905|gb|BU764099.1|BU764099
EST:     CAAGCTTCTTAGTCACCAGGATAAGCCAGCAATTATAAATGTGAACATAG                         GTACAACTGTGAAAGGGGCTGTGGATGATCTTGATCTGGTCATNNNNNNNC
genomic: CAAGCTTCTTAGTCACCAGGATAAGCCAGCAATTATAAATGTGAACATAGgcaagtttct ... acaattgcagGTACAACTGTGAAAGGGGCTGTGGATGATCTTGATCTGGTCATAAAAAAAC
EST: gi|13563443|gb|BG551589.1|BG551589
EST:     CAAGCTTCTTAGTCACCAGGATAAGCCAGCAATTATAAATGTGAACATAG                         GTACAACTGTGAAAGGGGCTGTGGATGATCTTGATCTGGTCATNNNNNNNC
genomic: CAAGCTTCTTAGTCACCAGGATAAGCCAGCAATTATAAATGTGAACATAGgcaagtttct ... acaattgcagGTACAACTGTGAAAGGGGCTGTGGATGATCTTGATCTGGTCATAAAAAAAC
EST: gi|27426440|gb|CA937960.1|CA937960
EST:     CTTCTTAGTCACCAGGATAAGCCAGCAATTATAAATGTGAACATAG                         GTACAACTGTGAAAGGGGCTGTGGATGATCTTGATCTGGTCATNNNNNNNC
genomic: CTTCTTAGTCACCAGGATAAGCCAGCAATTATAAATGTGAACATAGgcaagtttct ... acaattgcagGTACAACTGTGAAAGGGGCTGTGGATGATCTTGATCTGGTCATAAAAAAAC
EST: gi|192311122|gb|FK004461.1|FK004461
EST:     CAAGCTTCTTAGTCACCAGGATAAGCCAGCAATTATAAATGTGAACATAG                         GTACAACTGTGAAAGGGGCTGTGGATGATCTTGATCTGGTCATNNNNNNNC
genomic: CAAGCTTCTTAGTCACCAGGATAAGCCAGCAATTATAAATGTGAACATAGgcaagtttct ... acaattgcagGTACAACTGTGAAAGGGGCTGTGGATGATCTTGATCTGGTCATAAAAAAAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctcccctcctcttcattttgttgattctagctcatccaactgaaacaattgcagGTACAACTGTGAAAGGGGCTGTGGATGATCTTGATCTGGTCATAAAAAAACTTGAAGAAGCTGGATTTTCGCATGACAGATTCTACATCCATTGTGATGG
                   tgttgat  putative branch site (score: 4)
            ttcatttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gcaagtttcttcatcattgtttctctctctcgcatcccatgtctcccctcctcttcattttgttgattctagctcatccaactgaaacaattgcagGTACAACTGTGAAAGGGGCTGTGGATGATCTTGATCTGGTCATAAAAAAACTTGAAGAAGCTGGATTTTCGCATGACAGATTCTACATCCATTGTGATGG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGGA