1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...atgttttgctccttaaatttaccaggaaaggaattggtagggtggctgggtttcatttctttttttttataatttactcttgctatcacatttatgtcagGTGTTCTCGTGTTGCTGGTAACAATATGGTTGTTGACGCTTTGAATGAGGATTTGAGAATCAACGGAGCAGTTGAACCGTTGCCTGAGGACTTTGATGCA
species | Glycine max |
transcript | GLYMA08G19360.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: AGGCCAATTCTTTCGCCGCTTCTTCTCTCTTTCCAACGCTTCCCCCTGTG GTGTTCTCGTGTTGCTGGTAACAATATGGTTGTTGACGCTTTGAATGAGGAEST: gi|213598026|gb|DB972214.1|DB972214
genomic: AGGCCAATTCTTTCGCCGCTTCTTCTCTCTTTCCAACGCTTCCCCCTGTGgttcgttagc ... tttatgtcagGTGTTCTCGTGTTGCTGGTAACAATATGGTTGTTGACGCTTTGAATGAGGA
EST: GCTTCTTCTCTCTTTCCAACGCTTCCCCCTGTG GTGTTCTCGTGTTGCTGGTAACAATATGGTTGTTGACGCTTTGAATGAGGAEST: gi|209705370|gb|BW678499.1|BW678499
genomic: GCTTCTTCTCTCTTTCCAACGCTTCCCCCTGTGgttcgttagc ... tttatgtcagGTGTTCTCGTGTTGCTGGTAACAATATGGTTGTTGACGCTTTGAATGAGGA
EST: AGGCCAATTCTTTCGCCGCTTCTTCTCTCTTTCCAACGCTTCCCCCTGTG GTGTTCTCGTGTTGCTGGTAACAATATGGTTGTTGACGCTTTGAATGAGGAEST: gi|209724512|gb|BW669554.1|BW669554
genomic: AGGCCAATTCTTTCGCCGCTTCTTCTCTCTTTCCAACGCTTCCCCCTGTGgttcgttagc ... tttatgtcagGTGTTCTCGTGTTGCTGGTAACAATATGGTTGTTGACGCTTTGAATGAGGA
EST: AGGCCAATTCTTTCGCCGCTTCTTCTCTCTTTCCAACGCTTCCCCCTGTG GTGTTCTCGTGTTGCTGGTAACAATATGGTTGTTGACGCTTTGAATGAGGAEST: gi|19347409|gb|BM892289.1|BM892289
genomic: AGGCCAATTCTTTCGCCGCTTCTTCTCTCTTTCCAACGCTTCCCCCTGTGgttcgttagc ... tttatgtcagGTGTTCTCGTGTTGCTGGTAACAATATGGTTGTTGACGCTTTGAATGAGGA
EST: CCAATTCTTTCGCCGCTTCTTCTCTCTTTCCAACGCTTCCCCCTGTG GTGTTCTCGTGTTGCTGGTAACAATATGGTTGTTGACGCTTTGAATGAGGAEST: gi|213601349|gb|DB968693.1|DB968693
genomic: CCAATTCTTTCGCCGCTTCTTCTCTCTTTCCAACGCTTCCCCCTGTGgttcgttagc ... tttatgtcagGTGTTCTCGTGTTGCTGGTAACAATATGGTTGTTGACGCTTTGAATGAGGA
EST: AGGCCAATTCTTTCGCCGCTTCTTCTCTCTTTCCAACGCTTCCCCCTGTG GTGTTCTCGTGTTGCTGGTAACAATATGGTTGTTGACGCTTTGAATGAGGAEST: gi|151397511|gb|EV267384.1|EV267384
genomic: AGGCCAATTCTTTCGCCGCTTCTTCTCTCTTTCCAACGCTTCCCCCTGTGgttcgttagc ... tttatgtcagGTGTTCTCGTGTTGCTGGTAACAATATGGTTGTTGACGCTTTGAATGAGGA
EST: AGGCCAATTCTTTCGCCGCTTCTTCTCTCTTTCCAACGCTTCCCCCTGTG GTGTTCTCGTGTTGCTGGTAACAATATGGTTGTTGACGCTTTGAATGAGGA
genomic: AGGCCAATTCTTTCGCCGCTTCTTCTCTCTTTCCAACGCTTCCCCCTGTGgttcgttagc ... tttatgtcagGTGTTCTCGTGTTGCTGGTAACAATATGGTTGTTGACGCTTTGAATGAGGA
ctgggtttcatttctttttttttataatttactcttgctatcacatttatgtcagGTGTTCTCGTGTTGCTGGTAACAATATGGTTGTTGACGCTTTGAATGAGGATTTGAGAATCAACGGAGCAGTTGAACCGTTGCCTGAGGACTTTGATGCA
tttcatttcttttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atgttttgctccttaaatttaccaggaaaggaattggtagggtggctgggtttcatttctttttttttataatttactcttgctatcacatttatgtcagGTGTTCTCGTGTTGCTGGTAACAATATGGTTGTTGACGCTTTGAATGAGGATTTGAGAATCAACGGAGCAGTTGAACCGTTGCCTGAGGACTTTGATGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - tgctcct
- - - - - - - - - - - - -gaaaggaa
- - - - - - - - - - - - - - - - - -ggtaggg
- - - - - - - - - - - - - - - - - - - - - -ggctggg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctcttgc