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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttaagctcttcttcatcttacctctgcaatacgcttcattcattctgttgtgctgattttgtgttattgatgatggtgcagCACAGACAAACCTCTTTGGAACTCT

Basic information

species Glycine max
transcript GLYMA08G19310.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208065946|gb|GD865185.1|GD865185
EST:     GCGTGCCTTTCCCTCGGAGAACAGACTTTCCGTACCAACACCTCTGACCA                         CACAGACAAACCTCTTTGGAACTCT
genomic: GCGTGCCTTTCCCTCGGAGAACAGACTTTCCGTACCAACACCTCTGACCAgttaagctct ... gatggtgcagCACAGACAAACCTCTTTGGAACTCT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

caatacgcttcattcattctgttgtgctgattttgtgttattgatgatggtgcagCACAGACAAACCTCTTTGGAACTCT
                                      tattgat  putative branch site (score: 3)
                                     ttattgat  TA-rich tract