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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGTCTCAAAGGCTTGTTGAAGAAATAATTGACAAAAAAATTGTATTGTCCATGAGAGCCATTTATCAGTCAAAAATAGGTCTTGGCCTAATGGACATAGgtatgttttttttattaatatttgttctttttttgttattattattattatcattgaaataagctcttggctactgttatatttagctttaccagtcacc...

Basic information

species Glycine max
transcript GLYMA08G19310.1
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G19310.2 (Glycine max), 5'ss of exon 11
lower sequence: Vv12s0055g00710.t01 (Vitis vinifera), 5'ss of exon 8
AAGTCTCAAAGGCTTGTTGAAGAAATAATTGACAAAAAAATTGTATTGTCCATGAGAGCCATTTATCAGTCAAAAATAGGTCTTGGCCTAATGGACATAGgtatgtttt-ttttattaatatttgttctttttttgttattattat-tattatcattgaaataagctcttggctactgttatatttagctttaccagtcacc
| | |  | ||||||||||||||| |||||||   |||||||||  | || ||||||||||| || || |||||| |||| ||||||||||||||   |||||||  |  |||| ||  | ||     ||||  || |||  | |  ||| | |||||||  |     |   ||      |||  |||||| |  | |    
AGGACAAAGAGGCTTGTTGAAGAATTAATTGATGGAAAAATTGTCCTATCAATGAGAGCCATCTACCAATCAAAATTAGGGCTTGGCCTAATGGATGCAGgtatgagtaattttttttcttttccaagttttaatgatatagtcacctatcaacattgaaccagtagttgaacttaatagataggtagcttca--aattttt
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15286683|gb|BI470574.1|BI470574
EST:     CATGAGAGCCATTTATCAGTCAAAAATAGGTCTTGGCCTAATGGACATAG                         GGGTGAAGGAGCTCTTGCAAAGCATTTCTGAAAAGCAAGGAGCACGAATGG
genomic: CATGAGAGCCATTTATCAGTCAAAAATAGGTCTTGGCCTAATGGACATAGgtatgttttt ... tcttatgcagGGGTGAAGGAGCTCTTGCAAAGCATTTCTGAAAAGCAAGGAGCACGAATGG
EST: gi|151397882|gb|EV267755.1|EV267755
EST:     CATGAGAGCCATTTATCAGTCAAAAATAGGTCTTGGCCTAATGGACATAG                         GGGTGAAGGAGCCCTTGCAAAGCATTTCTGAAAAGCAAGGAGCACGAATGG
genomic: CATGAGAGCCATTTATCAGTCAAAAATAGGTCTTGGCCTAATGGACATAGgtatgttttt ... tcttatgcagGGGTGAAGGAGCTCTTGCAAAGCATTTCTGAAAAGCAAGGAGCACGAATGG