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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATTATCACCGTTTCCATTTTCCAGTATCAGGAATTATTGAGCAATCTGTAGATATCCCTGGATGCTTGTATACTgtatgtgtaataataacttgagaaaaatgataagtcatatatatatatatatatatatttgtctattttctttctgttaattctcatttgtgttttccccctattgtgttctactcctcag

Basic information

species Glycine max
transcript GLYMA08G19310.1
intron # 17
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58020769|gb|CX707511.1|CX707511
EST:     TATCAGGAATTATTGAGCAATCTGTAGATATCCCTGGATGCTTGTATACT                         GTCAATCCCATTGCTGTAAATAGCAAGTACTGCAATGTCTTCACGGAGAAC
genomic: TATCAGGAATTATTGAGCAATCTGTAGATATCCCTGGATGCTTGTATACTgtatgtgtaa ... tactcctcagGTCAATCCCATTGCTGTAAATAGCAAGTACTGCAATGTCTTCACGGAGAAC
EST: gi|192307706|gb|FK001650.1|FK001650
EST:     TATCAGGAATTATTGAGCAATCTGTAGATATCCCTGGATGCTTGTATACT                         GTCAATCCCATTGCTGTAAATAGCAAGTACTGCAATGTCTTCACGGAGAAC
genomic: TATCAGGAATTATTGAGCAATCTGTAGATATCCCTGGATGCTTGTATACTgtatgtgtaa ... tactcctcagGTCAATCCCATTGCTGTAAATAGCAAGTACTGCAATGTCTTCACGGAGAAC
EST: gi|51338331|gb|CO982197.1|CO982197
EST:     TATCAGGAATTATTGAGCAATCTGTAGATATCCCTGGATGCTTGTATACT                         GTCAATCCCATTGCTGTAAATAGCAAGTACTGCAATGTCTTCACGGAGAAC
genomic: TATCAGGAATTATTGAGCAATCTGTAGATATCCCTGGATGCTTGTATACTgtatgtgtaa ... tactcctcagGTCAATCCCATTGCTGTAAATAGCAAGTACTGCAATGTCTTCACGGAGAAC
EST: gi|151397882|gb|EV267755.1|EV267755
EST:     TATCAGGAATTATTGAGCAATCTGTAGATATCCCTGGATGCTTGTATACT                         GTCAATCCCATTGCTGTAAATAGCAAGTACTGCAATGTCTTCACGGAGAAC
genomic: TATCAGGAATTATTGAGCAATCTGTAGATATCCCTGGATGCTTGTATACTgtatgtgtaa ... tactcctcagGTCAATCCCATTGCTGTAAATAGCAAGTACTGCAATGTCTTCACGGAGAAC
EST: gi|9439775|gb|BE440289.1|BE440289
EST:     TATCAGGAATTATTGAGCAATCTGTAGATATCCCTGGATGCTTGTATACT                         GTCAATCCCATTGCTGTGAATAGCTAGTACTGGCA-TGGTCTTC-CGGAGA
genomic: TATCAGGAATTATTGAGCAATCTGTAGATATCCCTGGATGCTTGTATACTgtatgtgtaa ... tactcctcagGTCAATCCCATTGCTGTAAATAGCAAGTACTG-CAATG-TCTTCACGGAGA