Sequence
atgc intronic sequence ATGC exonic sequenceAGTTGAACAGCATGATCCACTTAACTCTTTGTTTTGATGAAGGGACTGGTAACCAGGTGATGGCTGGAGGATTCTTGACAGATAAGCAGGCTTCATACGGgtaaatttctgctaatttaggcattgagagactgggcatgagagagagtataagctttattgacctaatggattatacccccgttttatgaactatagttatgtaatttgtatcataagagaaaataaaaataacttttttttttgtttgtatag
Basic information
species | Glycine max |
transcript | GLYMA08G19310.1 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA08G19310.3 (Glycine max), 5'ss of exon 9
lower sequence: LOC_Os01g72940.1 (Oryza sativa), 5'ss of exon 7
AGTTGAACAGCATGATCCACTTAACTCTTTGTTTTGATGAAGGGACTGGTAACCAGGTGATGGCTGGAGGATTCTTGACAGATAAGCAGGCTTCATACGGgtaaatttctgctaatttaggcattgagagactgggcatgagagagagtataagctttattgacctaatggattatacccccgttttatgaactatagttatgtaatttgtatcataagagaaaataaaaataacttttttttttgtttgtatag
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AAATAAATGATATGATACACATGACACTTTGTTTTGATGAGGGAACTGGTAATCAGATTATGACTGGAGGATTTCTAACAGATAAGCAAGCATCATATGGgtaaagttctacacttatcaacaacaatatttt---tctgttcttttggaaacttcatatgaaattagtaagctatattccaagtc-atacatcttccatgtgtag-------------------------------------------------
upper sequence: GLYMA08G19310.3 (Glycine max), 5'ss of exon 9
lower sequence: Vv12s0055g00710.t01 (Vitis vinifera), 5'ss of exon 6
AGTTGAACAGCATGATCCACTTAACTCTTTGTTTTGATGAAGGGACTGGTAACCAGGTGATGGCTGGAGGATTCTTGACAGATAAGCAGGCTTCATACGGgtaaat-ttctgctaatttaggcattgagagactgggcatgagagagagtataagctttattgacctaatggattatacccccgttttatgaactatagttatgtaatttgtatcataagagaaaataaaaataacttttttttttgtttgtatag
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AGCTGAACAATATGATTCATATGAACCTATGTTTTGACGAAGGGACTGGAAACCAGGTTATGACTGGAGGGTTTTTGACTGATAAACAGGCTTCATATGGgtaaaaactttgttcatgttgatcttttg-gattatctatcata----atgtcatgattat-gaactgaaaagtaaaattctatttctctag----------------------------------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|15286683|gb|BI470574.1|BI470574EST: GATAAGCAGGCTTCATACGG GTGGTTTTTCAAACTGAGCGAATGGGCACATTTCTCATCTTACGATGTTGG
genomic: GATAAGCAGGCTTCATACGGgtaaatttct ... gtttgtatagGTGGTTTTTCAAACTGAGCGAATGGGCACATTTCTCATCTTACGATGTTGG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AGTTGAACAGCATGATCCACTTAACTCTTTGTTTTGATGAAGGGACTGGTAACCAGGTGATGGCTGGAGGATTCTTGACAGATAAGCAGGCTTCATACGGgtaaatttctgctaatttaggcattgagagactgggcatgagagagagtataagctttattgacctaatggattatacccccgttttatgaactatagttatgtaatttgtatcataagagaaaataaaaataacttttttttttgtttgtatag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT