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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCATGTCAAATGTATCAGCGATCTGCTGATATGGGCCTGGGCATTCCATTTAATATTGCATCTTATGCCCTTTTGACATGCATGATTGCTCATGTTTGTGgtatgctcattaagtcttttatttattatatttttggactttagttatgtgtggaggtcaattcagttctatatatattcccttttttagtaactgagaa...

Basic information

species Glycine max
transcript GLYMA06G01280.3
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G01280.1 (Glycine max), 5'ss of exon 9
lower sequence: LOC_Os11g29390.1 (Oryza sativa), 5'ss of exon 9
TCATGTCAAATGTATCAGCGATCTGCTGATATGGGCCTGGGCATTCCATTTAATATTGCATCTTATGCCCTTTTGACATGCATGATTGCTCATGTTTGTGgtatgctcattaagtcttttatt-tattatatttttggactttagttatgtgtggaggtcaattcagttctatatatattcccttttttagtaactgagaa-----
|| || || |||||||| || |||||||||||||| || ||  ||||||| || |||||||| ||| | ||| |||||| |||||||||||||||||| |||||| |       |||| ||   |  ||| |   ||||   |    | |     |  | | |   ||  | |  |   |     | || ||   |||        
TCGTGCCAGATGTATCAACGCTCTGCTGATATGGGACTTGGTGTTCCATTCAACATTGCATCATATTCTCTTCTGACATACATGATTGCTCATGTTTGCGgtatgtt------atcttctaccctgctatgtgactggataatcccaaaggtctaaccttattgatgtattgttcagcgtaagactgtttgttgttgatgttgtat

upper sequence: GLYMA06G01280.1 (Glycine max), 5'ss of exon 9
lower sequence: LOC_Os12g26060.1 (Oryza sativa), 5'ss of exon 7
TCATGTCAAATGTATCAGCGATCTGCTGATATGGGCCTGGGCATTCCATTTAATATTGCATCTTATGCCCTTTTGACATGCATGATTGCTCATGTTTGTGgtatg--ctcattaagtcttttatttattata-tttttggactttagttatgtgtggaggtcaattcag--ttctatatatattcccttttttagtaactgagaa
||||| || ||||| || || |||||||||||||| || ||  | ||||| || |||||||| ||| | ||| ||||||| |||||||| || || |||||||||  |||| |   |  | | ||||      || || |  |||  | | ||       ||||   ||    |  |  | || |   || || |||||      
TCATGCCAGATGTACCAACGCTCTGCTGATATGGGGCTCGGTGTGCCATTCAACATTGCATCATATTCTCTTCTGACATGTATGATTGCACAAGTGTGTGgtatgttctcacttgcttatctttttacaccggttattcgtttttcctaaagtcaaagcttcaaactagaacccattgcacatgctaattattcgtaaca-----

upper sequence: GLYMA06G01280.1 (Glycine max), 5'ss of exon 9
lower sequence: GRMZM2G139880_T01 (Zea mays), 5'ss of exon 8
TCATGTCAAATGTATCAGCGATCTGCTGATATGGGCCTGGGCATTCCATTTAATATTGCATCTTATGCCCTTTTGACATGCATGATTGCTCATGTTTGTGgtatgctcattaagtcttttatttattatatttttggacttta--gttatgtgtggaggtcaattcagttctatatatattcccttttttagtaactgagaa
|| || || |||||||| || ||||| || ||||| || ||  ||||||| || || ||||| ||| | ||||||||||  ||||||||||| |||||||||| | || |  |  | |   | || ||| | |    | |  |  |||   |||| |  | |||  |   ||   |   |   | | |   |||  || |  
TCCTGCCAGATGTATCAACGCTCTGCAGACATGGGGCTTGGTGTTCCATTCAACATCGCATCATATTCTCTTTTGACATATATGATTGCTCAAGTTTGTGgtaggttcttatatgcatcactgtaatatttctactcagtgcaacgtttattgtgcaccttaatagaaaccttcttggttgtacatgtactgtatttgtg--

upper sequence: GLYMA06G01280.1 (Glycine max), 5'ss of exon 9
lower sequence: Vv03s0038g04500.t01 (Vitis vinifera), 5'ss of exon 10
TCATGTCAAATGTATCAGCGATCTGCTGATATGGGCCTGGGCATTCCATTTAATATTGCATCTTATGCCCTTTTGACATGCATGATTGCTCATGTTTGTGgtatgctcat----taagtcttttatttattatatttttggactttagttatgtgtggaggtcaattcagt-tctatatatattcccttttttagtaactgagaa
||||| |||||||| |||||||||||||| ||||| || ||  | || ||||| |||||||||||||| || || ||||||||||| |||||||||||||||||||   |     || ||    |        | |||||  |    |  |  |    ||  |  || | | |||| ||| ||       | |||  |       
TCATGCCAAATGTACCAGCGATCTGCTGACATGGGTCTTGGTGTGCCGTTTAACATTGCATCTTATGCGCTCTTAACATGCATGATCGCTCATGTTTGTGgtatgcatttgtgacaaatccagaaacctaaccagttttgttcacatgcaaatttgctagaacgtttaaatatctagatagatgggtacatgtaggcatc-----

upper sequence: GLYMA06G01280.1 (Glycine max), 5'ss of exon 9
lower sequence: Vv18s0001g12940.t01 (Vitis vinifera), 5'ss of exon 8
TCATGTCAAATGTATCAGCGATCTGCTGATATGGGCCTGGGCATTCCATTTAATATTGCATCTTATGCCCTTTTGACATGCATGATTGCTCATGTTTGTGgtatgc--tcattaagtcttttatttattatatttttggactttagttatgt-gtggaggtcaattcagttctatatatattcccttttttagtaactgagaa-------------------------------------------------------------
|| ||||||||||||||||| |||||||||||||| || ||  | |||||||| ||||| ||||||||  | |||||||||||||||||||||||||||||||||   | |||    || | |     || |  |||| | |      || | ||     |   | ||    | ||| |  |  || |  | | |  ||  |                                                              
TCCTGTCAAATGTATCAGCGCTCTGCTGATATGGGTCTTGGTGTGCCATTTAACATTGCTTCTTATGCTTTATTGACATGCATGATTGCTCATGTTTGTGgtatgtatttatttctactatgagaatgtaaacctttgaaataagaggatctagttataatttctccatagttctatttcatttctgtcctggca-ttggcatcatgagttatcaatcatctacacccttttaaaaatccctctacattaatttgcctgtacag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208272311|gb|GE073181.1|GE073181
EST:     TAATATTGCATCTTATGCCCTTTTGACATGCATGATTGCCCATGTTTGTG                         ATCTCATTCCTGGTGATTTTATTCATGTTATTGGGGATGCTCATATTTACC
genomic: TAATATTGCATCTTATGCCCTTTTGACATGCATGATTGCTCATGTTTGTGgtatgctcat ... ttcttgtcagATCTCATTCCTGGTGATTTTATTCATGTTATTGGGGATGCTCATATTTACC
EST: gi|192311470|gb|FK005201.1|FK005201
EST:     TAATATTGCATCTTATGCCCTTTTGACATGCATGATTGCTCATGTTTGTG                         ATCTCATTCCTGGTGATTTTATTCATGTTATTGGGGATGCTCATATTTACC
genomic: TAATATTGCATCTTATGCCCTTTTGACATGCATGATTGCTCATGTTTGTGgtatgctcat ... ttcttgtcagATCTCATTCCTGGTGATTTTATTCATGTTATTGGGGATGCTCATATTTACC
EST: gi|193366029|gb|FK333334.1|FK333334
EST:     TAATATTGCATCTTATGCCCTTTTGACATGCATGATTGCTCATGTTTGTG                         ATCTCATTCCTGGTGATTTTATTCATGTTATTGGGGATGCTCATATTTACC
genomic: TAATATTGCATCTTATGCCCTTTTGACATGCATGATTGCTCATGTTTGTGgtatgctcat ... ttcttgtcagATCTCATTCCTGGTGATTTTATTCATGTTATTGGGGATGCTCATATTTACC
EST: gi|192311469|gb|FK005200.1|FK005200
EST:     TAATATTGCATCTTATGCCCTTTTGACATGCATGATTGCTCATGTTTGTG                         ATCTCATTCCTGGTGATTTTATTCATGTTATTGGGGATGCTCATATTTACC
genomic: TAATATTGCATCTTATGCCCTTTTGACATGCATGATTGCTCATGTTTGTGgtatgctcat ... ttcttgtcagATCTCATTCCTGGTGATTTTATTCATGTTATTGGGGATGCTCATATTTACC
EST: gi|193555347|gb|FK511032.1|FK511032
EST:     TGCATGATTGCTTCTATGTTTGTG                         ATCTCATTCCTGGTGATCTTATTCATGTTATTGGGGATGCTCATATTTAC
genomic: TGCATGATTGC-TC-ATGTTTGTGgtatgctcat ... ttcttgtcagATCTCATTCCTGGTGATTTTATTCATGTTATTGGGGATGCTCATATTTAC
EST: gi|193533234|gb|FK493712.1|FK493712
EST:     TAATATTGCATCTTATGCCCTTTTGACATGCATGATTGCTCATGTTTGTG                         ATCTCATTCCTGGTGATTTTATTCATGTTATTGGGGATGCTCATATTTACC
genomic: TAATATTGCATCTTATGCCCTTTTGACATGCATGATTGCTCATGTTTGTGgtatgctcat ... ttcttgtcagATCTCATTCCTGGTGATTTTATTCATGTTATTGGGGATGCTCATATTTACC
EST: gi|207838425|gb|GD811963.1|GD811963
EST:     TAATATTGCATCTTATGCCCTTTTGACATGCATGATTGCTCATGTTTGTG                         ATCTCATTCCTGGTGATTTTATTCATGTTATTGGGGATGCTCATATTTACC
genomic: TAATATTGCATCTTATGCCCTTTTGACATGCATGATTGCTCATGTTTGTGgtatgctcat ... ttcttgtcagATCTCATTCCTGGTGATTTTATTCATGTTATTGGGGATGCTCATATTTACC