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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TATGTGGAAGCATGTCTTCTGCATTGGAACTGTTAGCTGCTTCTCCTTACTCTCTGTCAATTGAGAAAGTTTTTGTTATAGGGGGTGGTCAGATATTTAGgtacatcattctttaaaatattttctcatatgctccttccttttcatgttaagctctttctttgttatagctgataattttcacgtacag

Basic information

species Glycine max
transcript GLYMA06G01280.3
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G01280.1 (Glycine max), 5'ss of exon 2
lower sequence: LOC_Os11g29390.1 (Oryza sativa), 5'ss of exon 2
TATGTGGAAGCATGTCTTCTGCATTGGAACTGTTAGCTGCTTCTCCTTACTCTCTGTCAATTGAGAAAGTTTTTGTTATAGGGGGTGGTCAGATATTTAGgta---catcattctttaaaatattttctcatatgc------tccttccttttcatgttaagctctttctttgtta-----tagctgataattttcacgtacag
| ||||||||||||   ||||||||||||||  || |  |  |||| |||| | | || ||||||||||||||||||||||||||||| ||  || | ||||      | |   |||   | |   |||  ||||       |  |   | |  ||  |   |     || | ||      || |||  || |||||| |  ||
TCTGTGGAAGCATGAACTCTGCATTGGAACTACTATCATCAACTCCATACTGTTTATCCATTGAGAAAGTTTTTGTTATAGGGGGTGGACAAGTACTAAGgtgagctgttaacttttgccaaagcatctagtatgtaaattgtgttgtttctgtatactccacctcaactctattcacctttatctgtaaaatttcac-tgtag

upper sequence: GLYMA06G01280.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv03s0038g04500.t01 (Vitis vinifera), 5'ss of exon 3
TATGTGGAAGCATGTCTTCTGCATTGGAACTGTTAGCTGCTTCTCCTTACTCTCTGTCAATTGAGAAAGTTTTTGTTATAGGGGGTGGTCAGATATTTAGgtacatcattctttaa--aatattttctcatat-gctccttccttttcatgttaagctctttctttgttatagctgataattttcacgtacag
|||||||||||||| ||||||| |||||||| |||||||| ||||| || | |||||| ||||| ||||| ||||||||||| ||||| |||||| | ||||   |  ||  || |  | |  | | | |    |||  ||| || |     |    | | | ||   || ||                    
TATGTGGAAGCATGGCTTCTGCTTTGGAACTATTAGCTGCATCTCCCTATTGTCTGTCCATTGAAAAAGTGTTTGTTATAGGAGGTGGCCAGATACTAAGgtgtgtactttgttgatcattgctgtattaaggagctttttcgttctttcagttgattatcttttcaatacag--------------------

upper sequence: GLYMA06G01280.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv18s0001g12940.t01 (Vitis vinifera), 5'ss of exon 1
TATGTGGAAGCATGTCTTCTGCATTGGAACTGTTAGCTGCTTCTCCTTACTCTCTGTCAATTGAGAAAGTTTTTGTTATAGGGGGTGGTCAGATATTTAGgtacatcattctttaaaatattttctcatatgctccttccttttcatgttaagctctttctttgttatagctgataattttcacgtacag
|||||||||||||| | || || ||| || |  | || |  |||||||| | | ||||||| || || || |||||||||||||||||||||||||| ||||   | |||  ||      | ||   ||    |     || ||  ||||||    ||    || ||| | |||    | | |  |||||
TATGTGGAAGCATGCCGTCAGCTTTGAAATTACTGGCAGAATCTCCTTATTGTTTGTCAATAGACAAGGTGTTTGTTATAGGGGGTGGTCAGATATTAAGgtgagtaatttattgc----tctttgaatgaagtggaaactgttt-tgttaa----ttataatgatattggtga----tcttatatacag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10846876|gb|BF069675.1|BF069675
EST:     TCTCTGTCAATTGAGAAAGTTTTTGTTATAGGGGGTGGTCAGATATTTAG                         AGAGGCTCTCAATGTGCCTGGATGTGAAGCTATCCACTTAACGGAAATTCA
genomic: TCTCTGTCAATTGAGAAAGTTTTTGTTATAGGGGGTGGTCAGATATTTAGgtacatcatt ... tcacgtacagAGAGGCTCTCAATGTGCCTGGATGTGAAGCTATCCACTTAACGGAAATTCA
EST: gi|308098411|gb|HO760152.1|HO760152
EST:     TCTCTGTCAATTGAGAAAGTTTTTGTTATAGGGGGTGGTCAGATATTTAG                         AGAGGCTCTCAATGTGCCTGGATGTGAAGCTATCCACTTAACGGAAATTCA
genomic: TCTCTGTCAATTGAGAAAGTTTTTGTTATAGGGGGTGGTCAGATATTTAGgtacatcatt ... tcacgtacagAGAGGCTCTCAATGTGCCTGGATGTGAAGCTATCCACTTAACGGAAATTCA
EST: gi|151397669|gb|EV267542.1|EV267542
EST:     TCTCTGTCAATTGAGAAAGTTTTTGTTATAGGGGGTGGTCAGATATTTAG                         AGAGGCTCTCAATGTGCCTGGATGTGAAGCTATCCACTTAACGGAAATTCA
genomic: TCTCTGTCAATTGAGAAAGTTTTTGTTATAGGGGGTGGTCAGATATTTAGgtacatcatt ... tcacgtacagAGAGGCTCTCAATGTGCCTGGATGTGAAGCTATCCACTTAACGGAAATTCA
EST: gi|21637920|gb|BM108075.1|BM108075
EST:     TCTCTGTCAATTGAGAAAGTTTTTGTTATAGGGGGTGGTCAGATATTTAG                         AGAGGCTCTCAATGTGCCTGGATGTGAAGCTATCCACTTAACGGAAATTCA
genomic: TCTCTGTCAATTGAGAAAGTTTTTGTTATAGGGGGTGGTCAGATATTTAGgtacatcatt ... tcacgtacagAGAGGCTCTCAATGTGCCTGGATGTGAAGCTATCCACTTAACGGAAATTCA