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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGCTACAGGAAAAAGGCATTCATATTTGGGATGGCAATGCATCCAGAGAATACCTTGATGGgcaagcatgactatatatttcaactttttaagtacaatttgtacatttttctttatattgcagtttgtaattggctttacattttttattgcag

Basic information

species Glycine max
transcript GLYMA06G01280.3
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G01280.1 (Glycine max), 5'ss of exon 6
lower sequence: LOC_Os11g29390.1 (Oryza sativa), 5'ss of exon 6
GTGCTACAGGAAAAAGGCATTCATATTTGGGATGGCAATGCATCCAGAGAATACCTTGATGGgcaagcatgactatatatttcaactttttaagta-caatttgtacatttttctttatattgcagtttgtaattggctttacatt-ttttattgcag-----
||  |||| || ||||||||||||||||||||||||||||| || ||||| || |||||  || |   ||     |  ||    |||  |  || | ||||   ||    | |  ||   |  |    | | ||    ||  ||   ||||| ||        
GTTTTACAAGAGAAAGGCATTCATATTTGGGATGGCAATGCTTCGAGAGAGTATCTTGACAGgtatttat---cttggatccacactagtcgagaaacaatggatattgctgttcttggttctcgtgctctgatccatttggcaaaattttactgtgttctag

upper sequence: GLYMA06G01280.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv18s0001g12940.t01 (Vitis vinifera), 5'ss of exon 5
GTGCTACAGGAAAAAGGCATTCATATTTGGGATGGCAATGCATCCAGAGAATACCTTGATGGgcaagcatgactatatatttcaactttttaagtacaatttgtacatttttctttatattgcagtttgtaattggctttacattttt-tattgcag
||||| ||| | |||| ||||||||| ||||||||||||||||||||||| ||||||||  |||||  |    |   ||||  ||  | ||     | ||||    | |   |||| |  |||||   |||| |   | || || | | | ||||||
GTGCTGCAGAAGAAAGACATTCATATATGGGATGGCAATGCATCCAGAGAGTACCTTGACAGGCAACTAC--TTGGCTATTGGAATCTgtt-----ctattttagaactg--ctttgtcctgcagg--gtaact---tatatatctatatgttgcag

upper sequence: GLYMA06G01280.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv03s0038g04500.t01 (Vitis vinifera), 5'ss of exon 7
GTGCTACAGGAAAAAGGCATTCATATTTGGGATGGCAATGCATCCAGAGAATACCTTGATGGgcaagcatgactatatatttcaactttttaagtacaatttgtacatttttctttatattgcagtttgtaattggctttacattttttattgcag
|| ||||||||||| || |||||||| |||||||||||||||||||| || ||||||||| ||||||  ||  | | |||    |  |  |  |   || | ||   |||       |       ||  | ||    |  | ||| | |||| |||
GTCCTACAGGAAAAGGGAATTCATATATGGGATGGCAATGCATCCAGGGACTACCTTGATAGgcaag--tggttgtctatccatatctactttgctaaactggtgtgtttc-----gtgcaattcttactgatatattcaatattctctatttcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192311470|gb|FK005201.1|FK005201
EST:     AAAGGCATTCATATTTGGGATGGCAATGCATCCAGAGAATACCTTAATGG                         TGTTGGTTTGACAGAGCGGGAGGAGGGTGACTTGGGACCTGTTTATGGGTT
genomic: AAAGGCATTCATATTTGGGATGGCAATGCATCCAGAGAATACCTTGATGGgcaagcatga ... tttattgcagTGTTGGTTTGACAGAGCGGGAGGAGGGTGACTTGGGACCTGTTTATGGGTT
EST: gi|192311469|gb|FK005200.1|FK005200
EST:     AAAGGCATTCATATTTGGGATGGCAATGCATCCAGAGAATACCTTAATGG                         TGTTGGTTTGACAGAGCGGGAGGAGGGTGACTTGGGACCTGTTTATGGGTT
genomic: AAAGGCATTCATATTTGGGATGGCAATGCATCCAGAGAATACCTTGATGGgcaagcatga ... tttattgcagTGTTGGTTTGACAGAGCGGGAGGAGGGTGACTTGGGACCTGTTTATGGGTT