1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtatgtgtaatgtttagcacttctttaagtttatcttttgactcttttacttgtttaccccctaatgtacttcattgcagACTTTGAAGATAAATCCAAAGAAGAAAGATATAGATTCTTTTGTGGCTGCTGATTTCAAGCTCATAGGCTATGATCCTCACCAGAAGATTGATATGAAGC
species | Glycine max |
transcript | GLYMA06G01280.3 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: ACGTGAGGCCTTTGCAGGAGCAGCTCCATAACCAGCCAAAGCCTTTTCCA ACTTTGAAGATAAATCCAAAGAAGAAAGATATAGATTCTTTTGTGGCTGCTEST: gi|193700182|gb|FK640719.1|FK640719
genomic: ACGTGAGGCCTTTGCAGGAGCAGCTCCATAACCAGCCAAAGCCTTTTCCAgtatgtgtaa ... ttcattgcagACTTTGAAGATAAATCCAAAGAAGAAAGATATAGATTCTTTTGTGGCTGCT
EST: TTGCAGGAGCAGCTCCATAACCAGCCAAAGCCTTTTCCA ACTTTGAAGATAAATCCAAAGAAGAAAGATATAGATTCTTTTGTGGCTGCTEST: gi|207682388|gb|GD664787.1|GD664787
genomic: TTGCAGGAGCAGCTCCATAACCAGCCAAAGCCTTTTCCAgtatgtgtaa ... ttcattgcagACTTTGAAGATAAATCCAAAGAAGAAAGATATAGATTCTTTTGTGGCTGCT
EST: ACGTGAGGCCTTTGCAGGAGCAGCTCCATAACCAGCCAAAGCCTTTTCCA ACTTTGAAGATAAATCCAAAGAAGAAAGATATAGATTCTTTTGTGGCTGCTEST: gi|193646153|gb|FK589588.1|FK589588
genomic: ACGTGAGGCCTTTGCAGGAGCAGCTCCATAACCAGCCAAAGCCTTTTCCAgtatgtgtaa ... ttcattgcagACTTTGAAGATAAATCCAAAGAAGAAAGATATAGATTCTTTTGTGGCTGCT
EST: ACGTGAGGCCTTTGCAGGAGCAGCTCCATAACCAGCCAAAGCCTTTTCCA ACTTTGAAGATAAATCCAAAGAAGAAAGATATAGATTCTTTTGTGGCTGCTEST: gi|192311470|gb|FK005201.1|FK005201
genomic: ACGTGAGGCCTTTGCAGGAGCAGCTCCATAACCAGCCAAAGCCTTTTCCAgtatgtgtaa ... ttcattgcagACTTTGAAGATAAATCCAAAGAAGAAAGATATAGATTCTTTTGTGGCTGCT
EST: ACGTGAGGCCTTTGCAG-AGCAGCTCCATAACCAGCCAAAGCCTTTTCCA ACTTTGAAGATAAATCCAEST: gi|193366029|gb|FK333334.1|FK333334
genomic: ACGTGAGGCCTTTGCAGGAGCAGCTCCATAACCAGCCAAAGCCTTTTCCAgtatgtgtaa ... ttcattgcagACTTTGAAGATAAATCCA
EST: ACGTGAGGCCTTTGCAGGAGCAGCTCCATAACCAGCCAAAGCCTTTTCCA ACTTTGAAGATAAATCCAAAGAAGAAAGAEST: gi|208182458|gb|GD980359.1|GD980359
genomic: ACGTGAGGCCTTTGCAGGAGCAGCTCCATAACCAGCCAAAGCCTTTTCCAgtatgtgtaa ... ttcattgcagACTTTGAAGATAAATCCAAAGAAGAAAGA
EST: ACGTGAGGCCTTTGCAGGAGCAGCTCCATAACCAGCCAAAGCCTTTTCCA ACTTTGAAGATAAATCCAAAGAAGAAAGATATAGATTCTTTTGTGGCTGCTEST: gi|208309317|gb|GE107995.1|GE107995
genomic: ACGTGAGGCCTTTGCAGGAGCAGCTCCATAACCAGCCAAAGCCTTTTCCAgtatgtgtaa ... ttcattgcagACTTTGAAGATAAATCCAAAGAAGAAAGATATAGATTCTTTTGTGGCTGCT
EST: ACGTGAGGCCTTTGCAGGAGCAGCTCCATAACCAGCCAAAGCCTTTTCCA ACTTTGAAGATAAATCCAAAGAAGAAAGATATAGATTCTTTTGTGGCTGCTEST: gi|193555347|gb|FK511032.1|FK511032
genomic: ACGTGAGGCCTTTGCAGGAGCAGCTCCATAACCAGCCAAAGCCTTTTCCAgtatgtgtaa ... ttcattgcagACTTTGAAGATAAATCCAAAGAAGAAAGATATAGATTCTTTTGTGGCTGCT
EST: CGTGAGGCCTTTGCAGGAGCAGCTCCAATAACCAGCCAAAGCCTTTTCCA ACTTTGAAGATAAATCCAAAGAAGAAAGATATAGATTCTTTTGTGGCTGCTEST: gi|193732938|gb|FK668603.1|FK668603
genomic: CGTGAGGCCTTTGCAGGAGCAGCTCC-ATAACCAGCCAAAGCCTTTTCCAgtatgtgtaa ... ttcattgcagACTTTGAAGATAAATCCAAAGAAGAAAGATATAGATTCTTTTGTGGCTGCT
EST: ACGTGAGGCCTTTGCAGGAGCAGCTCCATAACCAGCCAAAGCCTTTTCCA ACTTTGAAGATAAATCCAAAGAAGAAAGATATAGATTCTTTTGTGGCTGCTEST: gi|207838425|gb|GD811963.1|GD811963
genomic: ACGTGAGGCCTTTGCAGGAGCAGCTCCATAACCAGCCAAAGCCTTTTCCAgtatgtgtaa ... ttcattgcagACTTTGAAGATAAATCCAAAGAAGAAAGATATAGATTCTTTTGTGGCTGCT
EST: ACGTGAGGCCTTTGCAGGAGCAGCTCCATAACCAGCCAAAGCCTTTTCCA ACTTTGAAGATAAATCCAAAGAAGAAAGATATAGATTCTTTTGTGGCTGCT
genomic: ACGTGAGGCCTTTGCAGGAGCAGCTCCATAACCAGCCAAAGCCTTTTCCAgtatgtgtaa ... ttcattgcagACTTTGAAGATAAATCCAAAGAAGAAAGATATAGATTCTTTTGTGGCTGCT
taagtttatcttttgactcttttacttgtttaccccctaatgtacttcattgcagACTTTGAAGATAAATCCAAAGAAGAAAGATATAGATTCTTTTGTGGCTGCTGATTTCAAGCTCATAGGCTATGATCCTCACCAGAAGATTGATATGAAGC
ccctaat putative branch site (score: 3)
cttcatt putative PPT
ttatctttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgtgtaatgtttagcacttctttaagtttatcttttgactcttttacttgtttaccccctaatgtacttcattgcagACTTTGAAGATAAATCCAAAGAAGAAAGATATAGATTCTTTTGTGGCTGCTGATTTCAAGCTCATAGGCTATGATCCTCACCAGAAGATTGATATGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC