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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtagtgcaaaaaactttatgttgattattggataattaattaatgccacatgctgatgaatgaaattgcagGTAGTTGCTTATGATTTTGGAATCAAGCATAATATACTTAGGCGCCTAGCATCTTATGGCTGCAAAATCACTGTTGTGCCATGTACATGGTCAGCATCAG

Basic information

species Glycine max
transcript GLYMA04G39390.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G39390.1 (Glycine max), 3'ss of exon 7
lower sequence: AT3G27740.1 (Arabidopsis thaliana), 3'ss of exon 7
--------------------------gtaagtagtgcaaaaaactttatgttg--attattggataattaattaatgccacatgctgatgaatgaaattgcagGTAGTTGCTTATGATTTTGGAATCAAGCATAATATACTTAGGCGCCTAGCATCTTATGGCTGCAAAATCACTGTTGTGCCATGTACATGGTCAGCATCAG
                           | |    |||     ||| | | ||   ||  ||   | | |   |  | | | |   ||     |||| |   ||||  ||||||| ||||||||||||||||| || || || || |||||  ||||||| || ||  ||||||||||||| || |  ||||   ||||  | |
gtgagtattacttctctacttttgctcttatcgatgctttttactctctctttctatacttttcttactctctctttctatactttgtctcttgaattcaaagGTTATTGCTTACGATTTTGGAATCAAGCAAAACATCCTAAGACGCCTTTCATCTTACGGATGTCAAATCACTGTTGTTCCGTCCACATTTCCAGCTGCCG

upper sequence: GLYMA04G39390.1 (Glycine max), 3'ss of exon 7
lower sequence: Vv04s0044g00550.t01 (Vitis vinifera), 3'ss of exon 7
----------------------------------gtaagtagtgcaaaaaactttatgttgattattggataattaattaatgccacatgctgatgaatgaaattgcagGTAGTTGCTTATGATTTTGGAATCAAGCATAATATACTTAGGCGCCTAGCATCTTATGGCTGCAAAATCACTGTTGTGCCATGTACATGGTCAGCATCAG
                                     |  | |||  | || || |  || | |  | |||||||  ||  | | |  |     ||  || |  || ||||  | || ||||||||||| ||||||||||||||| | || ||  | ||||| |||||||| |||||||| ||||| ||||  |||||| |||| ||||
gttagtattactcgttcaaagtttatgctaataccagaaaattgcttacaatttgaatttcagt-ctcgataattc-tttgttctatctatccttgtttgga--tgaagGTTATCGCATATGATTTTGGGATCAAGCATAATATATTAAGACGTTTGGCATCCTATGGCTGTAAAATCACAGTTGTCCCATCAACATGGCCAGCTTCAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208341431|gb|GE134157.1|GE134157
EST:     AAACAAAACAACAATGGGAGTTTAGTAAAGTGCCTGGAGAGGCTTTCCAT                         GTAGTTGCTTATGATTTTGGAATCAAGCATAATATACTTAGGCGCCTAGCA
genomic: AAACAAAACAACAATGGGAGTTTAGTAAAGTGCCTGGAGAGGCTTTCCATgtaagtagtg ... gaaattgcagGTAGTTGCTTATGATTTTGGAATCAAGCATAATATACTTAGGCGCCTAGCA
EST: gi|208129606|gb|GD931916.1|GD931916
EST:     AAACAAAACAACAATGGGAGTTTAGTAAAGTGCCTGGAGAGGCTTTCCAT                         GTAGTTGCTTATGATTTTGGAATCAAGCATAATATACTTAGG
genomic: AAACAAAACAACAATGGGAGTTTAGTAAAGTGCCTGGAGAGGCTTTCCATgtaagtagtg ... gaaattgcagGTAGTTGCTTATGATTTTGGAATCAAGCATAATATACTTAGG
EST: gi|151406465|gb|EV276280.1|EV276280
EST:     AAACAAAACAACAATGGGAGTTTAGTAAAGTGCCTGGAGAGGCTTTCCAT                         GTAGTTGCTTATGATTTTGGAATCAAGCATAATATACTTAGGCGCCTAGCA
genomic: AAACAAAACAACAATGGGAGTTTAGTAAAGTGCCTGGAGAGGCTTTCCATgtaagtagtg ... gaaattgcagGTAGTTGCTTATGATTTTGGAATCAAGCATAATATACTTAGGCGCCTAGCA
EST: gi|192322448|gb|FK014929.1|FK014929
EST:     AAACAAA-CAACAATGGGAGTTTAGTAAAGTGCCTGGAGAGGCTTTCCAT                         GTAGTTGCTTATGATTTTGGAATCAAGCATAATATACTTAG-CGCCTAGCA
genomic: AAACAAAACAACAATGGGAGTTTAGTAAAGTGCCTGGAGAGGCTTTCCATgtaagtagtg ... gaaattgcagGTAGTTGCTTATGATTTTGGAATCAAGCATAATATACTTAGGCGCCTAGCA
EST: gi|33388074|gb|CA851281.1|CA851281
EST:     AAACAAAACAACAATGGGAGTTTAGTAAAGTGCCTGGAGAGGCTTTCCAT                         GTAGTTGCTTATGATTTTGGAATCAAGCATAATATACTTAGGCGCCTAGCA
genomic: AAACAAAACAACAATGGGAGTTTAGTAAAGTGCCTGGAGAGGCTTTCCATgtaagtagtg ... gaaattgcagGTAGTTGCTTATGATTTTGGAATCAAGCATAATATACTTAGGCGCCTAGCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatgttgattattggataattaattaatgccacatgctgatgaatgaaattgcagGTAGTTGCTTATGATTTTGGAATCAAGCATAATATACTTAGGCGCCTAGCATCTTATGGCTGCAAAATCACTGTTGTGCCATGTACATGGTCAGCATCAG
                                  tgctgat  putative branch site (score: 3)
     tgattattggataatt  TA-rich tract