1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
CGATTGCGGCAAGATGGCAGTCTTATTGGTGTTTTGAGCACTGACAATTCCAAAAAGGATGAGGAACTGCTTCACATGTCTAAGTCATGGAACATTGTTGgtaaggatacaaatctttgaggttgtgtaaatgtttctaaaaatggaattacatggatgttgtttcattttccag
species | Glycine max |
transcript | GLYMA04G39390.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: ATGTCTAAGTCATGGAACATTGTTG GTAAGGATCTAATAAGTGGAGTATCATGCAAAACTCCACATGAATGGGTTGEST: gi|208129606|gb|GD931916.1|GD931916
genomic: ATGTCTAAGTCATGGAACATTGTTGgtaaggatac ... cattttccagGTAAGGATCTAATAAGTGGAGTATCATGCAAAACTCCACATGAATGGGTTG
EST: CAAAAAGGATGAGGAACTGCTTCACATGTCTAAGTCATGGAACATTGTTG GTAAGGATCTAATAAGTGGAGTATCATGCAAAACTCCACATGAATGGGTTGEST: gi|151406465|gb|EV276280.1|EV276280
genomic: CAAAAAGGATGAGGAACTGCTTCACATGTCTAAGTCATGGAACATTGTTGgtaaggatac ... cattttccagGTAAGGATCTAATAAGTGGAGTATCATGCAAAACTCCACATGAATGGGTTG
EST: CAAAAAGGATGAGGAACTGCTTCACATGTCTAAGTCATGGAACATTGTTG GTAAGGATCTAATAAGTGGAGTATCATGCAAAACTCCACATGAATGGGTTGEST: gi|192322448|gb|FK014929.1|FK014929
genomic: CAAAAAGGATGAGGAACTGCTTCACATGTCTAAGTCATGGAACATTGTTGgtaaggatac ... cattttccagGTAAGGATCTAATAAGTGGAGTATCATGCAAAACTCCACATGAATGGGTTG
EST: CAAAAAGGATGAGGAACTGCTTCACATGTCTAAGTCATGGAACATTGTTG GGTAAGGATCTAATAAGTGGAGTATCATGCAAAACTCCACATGAATGGGTTEST: gi|33388074|gb|CA851281.1|CA851281
genomic: CAAAAAGGATGAGGAACTGCTTCACATGTCTAAGTCATGGAACATTGTTGgtaaggatac ... cattttccagG-TAAGGATCTAATAAGTGGAGTATCATGCAAAACTCCACATGAATGGGTT
EST: CAAAAAGGATGAGGAACTGCTTCACATGTCTAAGTCATGGAACATTGTTG GTAAGGATCTAATAAGTGGAGTATCATGCAAAACTCCACATGAATGGGTTG
genomic: CAAAAAGGATGAGGAACTGCTTCACATGTCTAAGTCATGGAACATTGTTGgtaaggatac ... cattttccagGTAAGGATCTAATAAGTGGAGTATCATGCAAAACTCCACATGAATGGGTTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGATTGCGGCAAGATGGCAGTCTTATTGGTGTTTTGAGCACTGACAATTCCAAAAAGGATGAGGAACTGCTTCACATGTCTAAGTCATGGAACATTGTTGgtaaggatacaaatctttgaggttgtgtaaatgtttctaaaaatggaattacatggatgttgtttcattttccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA