1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtgagtagtttatacaaaaagatgtgttgcgaacaactgttgcttgctctctgcaatctgcatgactgaagttttcaatttttgattttgtgggtgctttgtgatgcaacagATGATGTTGATACTCGTGCAATCACGCGGCGATTGCGGCAAGATGGCAGTCTTATTGGTGTTTTGAGCACTGACAATTCCAAAAAGGATGAGGAACTGCT
species | Glycine max |
transcript | GLYMA04G39390.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TAAGAAGCCTCTGGGGGATTACCTAGCTGAAAGGAATATCATGGGAATTT ATGATGTTGATACTCGTGCAATCACGCGGCGATTGCGGCAAGATGGCAGTCEST: gi|298166083|gb|HO009054.1|HO009054
genomic: TAAGAAGCCTCTGGGGGATTACCTAGCTGAAAGGAATATCATGGGAATTTgtgagtagtt ... gatgcaacagATGATGTTGATACTCGTGCAATCACGCGGCGATTGCGGCAAGATGGCAGTC
EST: TAAGAAGCCTCTGGGGGATTACCTAGCTGAAAGGAATATCATGGGAATTT ATGATGTTGATACTCEST: gi|120531240|gb|EH259373.1|EH259373
genomic: TAAGAAGCCTCTGGGGGATTACCTAGCTGAAAGGAATATCATGGGAATTTgtgagtagtt ... gatgcaacagATGATGTTGATACTC
EST: TAAGAAGCCTCTGGGGGATTACCTAGCTGAAAGGAATATCATGGGACTTT ATGATGTTGATACTCGTGCAATCACGCGGCGATTGCGGCAAGATGGCAGTCEST: gi|213605660|gb|DB972308.1|DB972308
genomic: TAAGAAGCCTCTGGGGGATTACCTAGCTGAAAGGAATATCATGGGAATTTgtgagtagtt ... gatgcaacagATGATGTTGATACTCGTGCAATCACGCGGCGATTGCGGCAAGATGGCAGTC
EST: TAAGAAGCCTCTGGGGGATTACCTAGCTGAAAGGAATATCATGGGAATTT ATGATGTTGATACTCGTGCAATCACGCGGCGATTGCGGCAAGATGGCAGTNEST: gi|192322448|gb|FK014929.1|FK014929
genomic: TAAGAAGCCTCTGGGGGATTACCTAGCTGAAAGGAATATCATGGGAATTTgtgagtagtt ... gatgcaacagATGATGTTGATACTCGTGCAATCACGCGGCGATTGCGGCAAGATGGCAGT-
EST: TAAGAAGCCTCTGGGGGATTACCTAGCTGAAAGGAATATCATGGGAATTT ATGATGTTGATACTCGTGCAATCACGCGGCGATTGCGGCAAGATGGCAGTCEST: gi|33388074|gb|CA851281.1|CA851281
genomic: TAAGAAGCCTCTGGGGGATTACCTAGCTGAAAGGAATATCATGGGAATTTgtgagtagtt ... gatgcaacagATGATGTTGATACTCGTGCAATCACGCGGCGATTGCGGCAAGATGGCAGTC
EST: TAAGAAGCCTCTGGGGGATTACCTAGCTGAAAGGAATATCATGGGAATTT ATGATGTTGATACTCGTGCAATCACGCGGCGATTGCGGCAAGATGGCAGTCEST: gi|18735504|gb|BM528801.1|BM528801
genomic: TAAGAAGCCTCTGGGGGATTACCTAGCTGAAAGGAATATCATGGGAATTTgtgagtagtt ... gatgcaacagATGATGTTGATACTCGTGCAATCACGCGGCGATTGCGGCAAGATGGCAGTC
EST: TAAGAAGCCTCTGGGGGATTACCTAGCTGAAAGGAATATCATGGGAATTT ATGATGTTGATACTCGTGCAATCACGCGGCGATTGCGGCAAGATGGCAGTCEST: gi|209726906|gb|BW680261.1|BW680261
genomic: TAAGAAGCCTCTGGGGGATTACCTAGCTGAAAGGAATATCATGGGAATTTgtgagtagtt ... gatgcaacagATGATGTTGATACTCGTGCAATCACGCGGCGATTGCGGCAAGATGGCAGTC
EST: TAAGAAGCCTCTGGNGGATTACCTAGCTGAAAGGAATATCATGGGAATTT ATGATGTTGATACTCGTGCAATCACGCGGCGATTGCGGCAAGATGGCAGTCEST: gi|192326456|gb|FK017713.1|FK017713
genomic: TAAGAAGCCTCTGGGGGATTACCTAGCTGAAAGGAATATCATGGGAATTTgtgagtagtt ... gatgcaacagATGATGTTGATACTCGTGCAATCACGCGGCGATTGCGGCAAGATGGCAGTC
EST: TAAGAAGCCTCTGGGGGATTACCTAGCTGAAAGGAATATCATGGGAATTT ATGATGTTGATACTCGTGCAATCACGCGGCGATTGCGGCAAGATGGCAGTC
genomic: TAAGAAGCCTCTGGGGGATTACCTAGCTGAAAGGAATATCATGGGAATTTgtgagtagtt ... gatgcaacagATGATGTTGATACTCGTGCAATCACGCGGCGATTGCGGCAAGATGGCAGTC
ctgcatgactgaagttttcaatttttgattttgtgggtgctttgtgatgcaacagATGATGTTGATACTCGTGCAATCACGCGGCGATTGCGGCAAGATGGCAGTCTTATTGGTGTTTTGAGCACTGACAATTCCAAAAAGGATGAGGAACTGCT
ttttgat putative branch site (score: 4)
aagttttcaatttttg TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagtagtttatacaaaaagatgtgttgcgaacaactgttgcttgctctctgcaatctgcatgactgaagttttcaatttttgattttgtgggtgctttgtgatgcaacagATGATGTTGATACTCGTGCAATCACGCGGCGATTGCGGCAAGATGGCAGTCTTATTGGTGTTTTGAGCACTGACAATTCCAAAAAGGATGAGGAACTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG