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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTAGACTTGTGCTTGAAGATGGTTCAATTTGGAGAGCAAAATCGTTTGGTGCTTCAGGGACCCAAGTTGGCGAGGTTGTTTTCAATACATCATTGACAGGgtgaggaaactatgaatcttgggatgtgtgtttctttttcatggctttgcttgcatgctgaatatgtggctggttttctttgttgtgttgtgtgtgtgattatcag

Basic information

species Glycine max
transcript GLYMA04G39390.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G39390.1 (Glycine max), 5'ss of exon 2
lower sequence: LOC_Os02g47850.3 (Oryza sativa), 5'ss of exon 3
CTAGACTTGTGCTTGAAGATGGTTCAATTTGGAGAGCAAAATCGTTTGGTGCTTCAGGGACCCAAGTTGGCGAGGTTGTTTTCAATACATCATTGACAGGgtgaggaaacta------tgaatcttgggatgtgtgtttctttttcat--ggctttgcttg--------catgctgaatatgtggctggttttct----ttgttgtgttgtgtgtg-tgattatcag-------------------------------------
|| | || || ||||| ||||||||| ||||||  || || || |||||||||||||| || |||||||| || || || || |||||||| |||||||||| |   |||||      ||| |  ||| || ||| |    || |  |   | | |||||         | || |  | |     ||    |  |    | |||| |  | | ||  || ||||                                        
CTCGGCTCGTTCTTGAGGATGGTTCAGTTTGGAAGGCCAAGTCTTTTGGTGCTTCAGGAACACAAGTTGGTGAAGTGGTATTTAATACATCTTTGACAGGgtaaatcaactaaccgtttgagtgatggcatttgtttcctgttgtggttgagatgtgcttattgttcttcctgatagagaaacaactaacctcatcaaatagttgagacgcgcgtactgcttattgacaacaggaaacaactaacctcatcaaatgggctgcag

upper sequence: GLYMA04G39390.1 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G029573_T01 (Zea mays), 5'ss of exon 3
CTAGACTTGTGCTTGAAGATGGTTCAATTTGGAGAGCAAAATCGTTTGGTGCTTCAGGGACCCAAGTTGGCGAGGTTGTTTTCAATACATCATTGACAGGgtgaggaaactatgaatcttgggatgtgtgtttctttttcatggctttgcttgcatgctgaatatgtggctggttttctttgttgtgttgtgtgtgtgattatcag
|| | ||||| || |||||||| ||| | ||||  || || || |||||||||||||| || |||||||| || ||||||||||| |||||| ||||||||| |   |  | || |    |  | |  | | |||   |   |   |   |||||||     |  ||   || || |||  || ||| | ||| |   ||      
CTCGTCTTGTCCTGGAAGATGGATCAGTGTGGACGGCCAAGTCTTTTGGTGCTTCAGGAACACAAGTTGGTGAAGTTGTTTTCAACACATCACTGACAGGgtaaatcattt-tggactgagttacgcttttgtctaagtggggcgatgttttgcatgtcttttg-gttattgtttatctgagtggtggtatgtttcgcatct----

upper sequence: GLYMA04G39390.1 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G147450_T02 (Zea mays), 5'ss of exon 2
CTAGACTTGTGCTTGAAGATGGTTCAATTTGGAGAGCAAAATCGTTTGGTGCTTCAGGGACCCAAGTTGGCGAGGTTGTTTTCAATACATCATTGACAGGgtgaggaaactatgaatcttgggatgtgtgtttctttttcatggctttgcttgcatgctgaatatgtggctggttttctttgttgtgttgtgtgtgtgattatcag
|| | ||||| || |||||||||||| | ||||| || || || ||||| || ||||| || ||||| || || ||||||||||| |||||| ||||||||| ||  |  | || |    |  |||| | | |||   |  |||| |   |||||||     |   ||| || |||| | ||  | |     |      || |   
CTCGTCTTGTCCTGGAAGATGGTTCAGTGTGGAGGGCCAAGTCTTTTGGCGCATCAGGAACACAAGTCGGTGAAGTTGTTTTCAACACATCACTGACAGGgtaagtcattt-tggactgagttatgtttttgtctgggtagtggcatgttttgcatgtct--tggttggttgtttttttctgc-gaggaaaataaagccttgta--

upper sequence: GLYMA04G39390.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv04s0044g00550.t01 (Vitis vinifera), 5'ss of exon 2
CTAGACTTGTGCTTGAAGATGGTTCAATTTGGAGAGCAAAATCGTTTGGTGCTTCAGGGACCCAAGTTGGCGAGGTTGTTTTCAATACATCATTGACAGGgtgaggaaactatgaatcttgggatgtgtgtttctttttcatggctttgcttgcatgctgaatatgtggc-tggttttctttgttgtgttgtgtgtgtgattatcag
|||||||||| ||||||||||| ||| | ||||  ||||| || |||||||||||||| || |||||||| || || |||||||||||||| || ||||||| ||   ||  | ||| |       |  |    |    |  | | |  ||||  |    |  ||    | |  |    |  |   || | | |   | |||     
CTAGACTTGTTCTTGAAGATGGCTCAGTCTGGAAGGCAAAGTCATTTGGTGCTTCAGGAACTCAAGTTGGAGAAGTGGTTTTCAATACATCTTTAACAGGgttagatgacgttaaatttcttttaattagaaagtggagctagacct--cttgtttctgaaggataaaacataataggataagaattgctttctcattaatt-----

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298163265|gb|HO011998.1|HO011998
EST:     GCTTCAGGGACCCAAGTTGGCGAGGTTGTTTTCAATACATCATTGACAGG                         GTATCAAGAAATTTTGACTGATCCTAGTTATGCTGGCCAGTTTGTGCTCAT
genomic: GCTTCAGGGACCCAAGTTGGCGAGGTTGTTTTCAATACATCATTGACAGGgtgaggaaac ... tgattatcagGTATCAAGAAATTTTGACTGATCCTAGTTATGCTGGCCAGTTTGTGCTCAT
EST: gi|208289150|gb|GE081467.1|GE081467
EST:     GCTTCAGGGACCCAAGTTGGCGAGGTTGTTTTCAATACATCATTGACAGG                         GTATCAAGAAATTTTGACTGATCCTAGTTATGCTGGCCAGTTTGTGCTCAT
genomic: GCTTCAGGGACCCAAGTTGGCGAGGTTGTTTTCAATACATCATTGACAGGgtgaggaaac ... tgattatcagGTATCAAGAAATTTTGACTGATCCTAGTTATGCTGGCCAGTTTGTGCTCAT
EST: gi|213620406|gb|DB957303.1|DB957303
EST:     GCTTCAGGGACCCAAGTTGGCGAGGTTGTTTTCAATACATCATTGACAGG                         GTATCAAGAAATTTTGACTGATCCTAGTTATGCTGGCCAGTTTGTGCTCAT
genomic: GCTTCAGGGACCCAAGTTGGCGAGGTTGTTTTCAATACATCATTGACAGGgtgaggaaac ... tgattatcagGTATCAAGAAATTTTGACTGATCCTAGTTATGCTGGCCAGTTTGTGCTCAT
EST: gi|298180620|gb|HO025707.1|HO025707
EST:     GCTTCAGGGACCCAAGTTGGCGAAGTTGTTTTCAATACATCATTGACAGG                         GTATCAAGAAATTTTGACTGATCCTAGTTATGCTGGCCAGTTTGTGCTCAT
genomic: GCTTCAGGGACCCAAGTTGGCGAGGTTGTTTTCAATACATCATTGACAGGgtgaggaaac ... tgattatcagGTATCAAGAAATTTTGACTGATCCTAGTTATGCTGGCCAGTTTGTGCTCAT
EST: gi|16997114|gb|BM086486.1|BM086486
EST:     GCTTCAGGGACCCAAGTTGGCGAGGTTGTTTTCAATACATCATTGACAGG                         GTATCAAGAAATTTTGACTGATCCTAGTTATGCTGGCCAGTTTGTGCTCAT
genomic: GCTTCAGGGACCCAAGTTGGCGAGGTTGTTTTCAATACATCATTGACAGGgtgaggaaac ... tgattatcagGTATCAAGAAATTTTGACTGATCCTAGTTATGCTGGCCAGTTTGTGCTCAT
EST: gi|298166083|gb|HO009054.1|HO009054
EST:     GCTTCAGGGACCCAAGTTGGCGAGGTTGTTTTCAATACATCGTTGACAGG                         GTATCAAGAAATTTTGACTGATCCTAGTTATGCTGGCCAGTTTGTGCTCAT
genomic: GCTTCAGGGACCCAAGTTGGCGAGGTTGTTTTCAATACATCATTGACAGGgtgaggaaac ... tgattatcagGTATCAAGAAATTTTGACTGATCCTAGTTATGCTGGCCAGTTTGTGCTCAT
EST: gi|120531240|gb|EH259373.1|EH259373
EST:     GCTTCAGGGACCCAAGTTGGCGAGGTTGTTTTCAATACATCATTGACAGG                         GTATCAAGAAATTTTGACTGATCCTAGTTATGCTGGCCAGTTTGTGCTCAT
genomic: GCTTCAGGGACCCAAGTTGGCGAGGTTGTTTTCAATACATCATTGACAGGgtgaggaaac ... tgattatcagGTATCAAGAAATTTTGACTGATCCTAGTTATGCTGGCCAGTTTGTGCTCAT
EST: gi|207686059|gb|GD670385.1|GD670385
EST:     GCTTCAGGGACCCAAGTTGGCGAGGTTGTTTTCAATACATCATTGACAGG                         GTATCAAGAAATTTT
genomic: GCTTCAGGGACCCAAGTTGGCGAGGTTGTTTTCAATACATCATTGACAGGgtgaggaaac ... tgattatcagGTATCAAGAAATTTT
EST: gi|213605660|gb|DB972308.1|DB972308
EST:     GCTTCAGGGACCCAAGTTGGCGAGGTTGTTTTCAATACATCATTGACAGG                         GTATCAAGAAATTTTGACTGATCCTAGTTATGCTGGCCAGTTTGTGCTCAT
genomic: GCTTCAGGGACCCAAGTTGGCGAGGTTGTTTTCAATACATCATTGACAGGgtgaggaaac ... tgattatcagGTATCAAGAAATTTTGACTGATCCTAGTTATGCTGGCCAGTTTGTGCTCAT
EST: gi|192322448|gb|FK014929.1|FK014929
EST:     GCTTCAGGGACCCAAGTTGGCGAGGTTGTTTTCAATACATCATTGACAGG                         GTATCAAGAAATTTTGACTGATCCTAGTTATGCTGGCCAGTTTGTGCTCAT
genomic: GCTTCAGGGACCCAAGTTGGCGAGGTTGTTTTCAATACATCATTGACAGGgtgaggaaac ... tgattatcagGTATCAAGAAATTTTGACTGATCCTAGTTATGCTGGCCAGTTTGTGCTCAT
EST: gi|33388074|gb|CA851281.1|CA851281
EST:     GCTTCAGGGACCCAAGTTGGCGAGGTTGTTTTCAATACAACATTGACAGG                         GTATCAAGAAATTTTGACTGATCCTAGTTATGCTGGCCAGTTTGTGCTCAT
genomic: GCTTCAGGGACCCAAGTTGGCGAGGTTGTTTTCAATACATCATTGACAGGgtgaggaaac ... tgattatcagGTATCAAGAAATTTTGACTGATCCTAGTTATGCTGGCCAGTTTGTGCTCAT
EST: gi|18735504|gb|BM528801.1|BM528801
EST:     GCTTCAGGGACCCAAGTTGGCGAGGTTGTTTTCAATACATCATTGACAGG                         GTATCAAGAAATTTTGACTGATCCTAGTTATGCTGGCCAGTTTGTGCTCAT
genomic: GCTTCAGGGACCCAAGTTGGCGAGGTTGTTTTCAATACATCATTGACAGGgtgaggaaac ... tgattatcagGTATCAAGAAATTTTGACTGATCCTAGTTATGCTGGCCAGTTTGTGCTCAT
EST: gi|209726906|gb|BW680261.1|BW680261
EST:     GCTTCAGGGACCCAAGTTGGCGAGGTTGTTTTCAATACATCATTGACAGG                         GTATCAAGAAATTTTGACTGATCCTAGTTATGCTGGCCAGTTTGTGCTCAT
genomic: GCTTCAGGGACCCAAGTTGGCGAGGTTGTTTTCAATACATCATTGACAGGgtgaggaaac ... tgattatcagGTATCAAGAAATTTTGACTGATCCTAGTTATGCTGGCCAGTTTGTGCTCAT
EST: gi|208063827|gb|GD861981.1|GD861981
EST:     TGGCGAGGTTGTTTTCAATACATCATTGACAGG                         GTATACAAAGAAAATTTTGACTGATCCTAGTTATGCTGGCCAGTTTGTGCT
genomic: TGGCGAGGTTGTTTTCAATACATCATTGACAGGgtgaggaaac ... tgattatcagGTAT-C-AAG-AAATTTTGACTGATCCTAGTTATGCTGGCCAGTTTGTGCT
EST: gi|207799067|gb|GD771356.1|GD771356
EST:     CTTCAGGGACCCAAGTTGGCGAGGTTGTTTTCAATACTATCATTGACAGG                         GTATCAAGAAATTTTGACTGATCCTAGTTATGCTGGCCAGTTT
genomic: CTTCAGGGACCCAAGTTGGCGAGGTTGTTTTCAATAC-ATCATTGACAGGgtgaggaaac ... tgattatcagGTATCAAGAAATTTTGACTGATCCTAGTTATGCTGGCCAGTTT
EST: gi|192326456|gb|FK017713.1|FK017713
EST:     GCTTCAGGGACCCAAGTTGGCGAGGTTGTTTTCAATACATCATTGACAGG                         GTATCAAGAAATTTTGACTGATCCTAGTTATGCTGGCCAGTTTGTGCTCAT
genomic: GCTTCAGGGACCCAAGTTGGCGAGGTTGTTTTCAATACATCATTGACAGGgtgaggaaac ... tgattatcagGTATCAAGAAATTTTGACTGATCCTAGTTATGCTGGCCAGTTTGTGCTCAT