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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGATGAGGAATCAATACAGTGTTTCCTTGCTGGACTTGTAATTAGAAGTTTGAGTATCAGgttctgttctcgtgctatggaattgtttttccgttgattgaggtttgattaatctacttacactttctgtctctttgcaatgcatgtttattcag

Basic information

species Glycine max
transcript GLYMA04G39390.1
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208289150|gb|GE081467.1|GE081467
EST:     TCAATACAGTGTTTCCTTGCTGGACTTGTAATTAGAAGTTTGAGTATCAG                         TACCTCTAACTGGAGACGTAAG
genomic: TCAATACAGTGTTTCCTTGCTGGACTTGTAATTAGAAGTTTGAGTATCAGgttctgttct ... gtttattcagTACCTCTAACTGGAGATGTAAG
EST: gi|298180620|gb|HO025707.1|HO025707
EST:     TCAATACAGTGTTTCCTTGCTGGACTTGTAATTAGAAGTTTGAGTATCAG                         TACCTCTAACTGG
genomic: TCAATACAGTGTTTCCTTGCTGGACTTGTAATTAGAAGTTTGAGTATCAGgttctgttct ... gtttattcagTACCTCTAACTGG
EST: gi|16997114|gb|BM086486.1|BM086486
EST:     TCAATACAGTGTTTCCTTGCTGGACTTGTAATTAGAAGTTTGAGTATCAG                         TACCTCTAACTGGAGATGTAAGAAGCCTCTGGGGGATTACCTAGCTGAAAG
genomic: TCAATACAGTGTTTCCTTGCTGGACTTGTAATTAGAAGTTTGAGTATCAGgttctgttct ... gtttattcagTACCTCTAACTGGAGATGTAAGAAGCCTCTGGGGGATTACCTAGCTGAAAG
EST: gi|298166083|gb|HO009054.1|HO009054
EST:     TCAATACAGTGTTTCCTTGCTGGACTTGTAATTAGAAGTTTGAGTATCAG                         TACCTCTAACTGGAGATGTAAGAAGCCTCTGGGGGATTACCTAGCTGAAAG
genomic: TCAATACAGTGTTTCCTTGCTGGACTTGTAATTAGAAGTTTGAGTATCAGgttctgttct ... gtttattcagTACCTCTAACTGGAGATGTAAGAAGCCTCTGGGGGATTACCTAGCTGAAAG
EST: gi|120531240|gb|EH259373.1|EH259373
EST:     TCAATACAGTGTTTCCTTGCTGGACTTGTAATTAGAAGTTTGAGTATCAG                         TACCTCTAACTGGAGATGTAAGAAGCCTCTGGGGGATTACCTAGCTGAAAG
genomic: TCAATACAGTGTTTCCTTGCTGGACTTGTAATTAGAAGTTTGAGTATCAGgttctgttct ... gtttattcagTACCTCTAACTGGAGATGTAAGAAGCCTCTGGGGGATTACCTAGCTGAAAG
EST: gi|213605660|gb|DB972308.1|DB972308
EST:     TCAATACAGTGTTTCCTTGCTGGACTTGTAATTAGAAGTTTGAGTATCAG                         TACCTCTAACTGGAGATGTAAGAAGCCTCTGGGGGATTACCTAGCTGAAAG
genomic: TCAATACAGTGTTTCCTTGCTGGACTTGTAATTAGAAGTTTGAGTATCAGgttctgttct ... gtttattcagTACCTCTAACTGGAGATGTAAGAAGCCTCTGGGGGATTACCTAGCTGAAAG
EST: gi|192322448|gb|FK014929.1|FK014929
EST:     TCAATACAGTGTTTCCTTGCTGGACTTGTAATTAGAAGTTTGAGTATCAG                         TACCTCTAACTGGAGATGTAAGAAGCCTCTGGGGGATTACCTAGCTGAAAG
genomic: TCAATACAGTGTTTCCTTGCTGGACTTGTAATTAGAAGTTTGAGTATCAGgttctgttct ... gtttattcagTACCTCTAACTGGAGATGTAAGAAGCCTCTGGGGGATTACCTAGCTGAAAG
EST: gi|33388074|gb|CA851281.1|CA851281
EST:     TCAATACAGTGTTTCCTTGCTGGACTTGTAATTAGAAGTTTGAGTATCAG                         TACCTCTAACTGGAGATGTAAGAAGCCTCTGGGGGATTACCTAGCTGAAAG
genomic: TCAATACAGTGTTTCCTTGCTGGACTTGTAATTAGAAGTTTGAGTATCAGgttctgttct ... gtttattcagTACCTCTAACTGGAGATGTAAGAAGCCTCTGGGGGATTACCTAGCTGAAAG
EST: gi|18735504|gb|BM528801.1|BM528801
EST:     TCAATACAGTGTTTCCTTGCTGGACTTGTAATTAGAAGTTTGAGTATCAG                         TACCTCTAACTGGAGATGTAAGAAGCCTCTGGGGGATTACCTAGCTGAAAG
genomic: TCAATACAGTGTTTCCTTGCTGGACTTGTAATTAGAAGTTTGAGTATCAGgttctgttct ... gtttattcagTACCTCTAACTGGAGATGTAAGAAGCCTCTGGGGGATTACCTAGCTGAAAG
EST: gi|209726906|gb|BW680261.1|BW680261
EST:     TCAATACAGTGTTTCCTTGCTGGACTTGTAATTAGAAGTTTGAGTATCAG                         TACCTCTAACTGGAGATGTAAGAAGCCTCTGGNGGATTACCTAGCTGAAAG
genomic: TCAATACAGTGTTTCCTTGCTGGACTTGTAATTAGAAGTTTGAGTATCAGgttctgttct ... gtttattcagTACCTCTAACTGGAGATGTAAGAAGCCTCTGGGGGATTACCTAGCTGAAAG
EST: gi|208063827|gb|GD861981.1|GD861981
EST:     TCAATACAGTGTTTCCTTGCTGGACTTGTAATTAGAAGTTTGAGTATCAG                         TACCTCTAACTGGAGATGTAAGAAGCCTCTGGGGGATTACCTAGCTGAAAG
genomic: TCAATACAGTGTTTCCTTGCTGGACTTGTAATTAGAAGTTTGAGTATCAGgttctgttct ... gtttattcagTACCTCTAACTGGAGATGTAAGAAGCCTCTGGGGGATTACCTAGCTGAAAG
EST: gi|192326456|gb|FK017713.1|FK017713
EST:     TCAATACAGTGTTTCCTTGCTGGACTTGTAATTAGAAGTTTGAGTATCAG                         TACCTCTAACTGGAGATGTAAGAAGCCTCTGGGGGATTACCTAGCTGAAAG
genomic: TCAATACAGTGTTTCCTTGCTGGACTTGTAATTAGAAGTTTGAGTATCAGgttctgttct ... gtttattcagTACCTCTAACTGGAGATGTAAGAAGCCTCTGGGGGATTACCTAGCTGAAAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ATGATGAGGAATCAATACAGTGTTTCCTTGCTGGACTTGTAATTAGAAGTTTGAGTATCAGgttctgttctcgtgctatggaattgtttttccgttgattgaggtttgattaatctacttacactttctgtctctttgcaatgcatgtttattcag

- - - - - - - - - - - - - -  GCTGGA
- - - - - - - - - - - - - - - - - - - - - - AGAAGT