1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...tggcaacatctgttatgatgcttggattttcttggttgtgttcatgcttacaagttaacatcattttgtgtatagattcttacatcttttcttctaacagGAAAGAGAAGTTAAATTTTTCACTGAAACAGAGGAGAACAACCAGATGAGAGGCCCCAGGACAGGCGTCCCATATTTCTTATAAATTGATGTTTTTCTTG
species | Glycine max |
transcript | GLYMA0048S00290.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: GTTACCGTTGTGGAAATGTAGCTTCTATTCTTAGTTTCAATGAAAATATG GAAAGAGAAGTTAAATTTTTCACTGAAACAGAGGEST: gi|213611336|gb|DB983956.1|DB983956
genomic: GTTACCGTTGTGGAAATGTAGCTTCTATTCTTAGTTTCAATGAAAATATGgtgagccacc ... cttctaacagGAAAGAGAAGTTAAATTTTTCACTGAAACAGAGG
EST: GTTACCGTTGTGGAAATGTAGCTTCTATTCTTAGTTTCAATGAAAATATG GAAAGAGAAGTTAAATTTTTCACTGAAACAGAGGAGAACAACCAGATGAGAEST: gi|209728925|gb|BW651715.1|BW651715
genomic: GTTACCGTTGTGGAAATGTAGCTTCTATTCTTAGTTTCAATGAAAATATGgtgagccacc ... cttctaacagGAAAGAGAAGTTAAATTTTTCACTGAAACAGAGGAGAACAACCAGATGAGA
EST: TTAGTTTCAATGAAAATAT- ----GAGAAGTTAAATTTTTCACTGAAACAGAGGAGAACAACCAGATGAGAEST: gi|193346878|gb|FK310146.1|FK310146
genomic: TTAGTTTCAATGAAAATATGgtgagccacc ... cttctaacagGAAAGAGAAGTTAAATTTTTCACTGAAACAGAGGAGAACAACCAGATGAGA
EST: TTACCGTTGTGGAAATGTAGCTTCTATTCTTAGTTTCAATGAAAAATATG GAAAGAGAAGTTAAATTTTTCACTGAAACAGAGGAGAACAEST: gi|207746865|gb|GD721124.1|GD721124
genomic: TTACCGTTGTGGAAATGTAGCTTCTATTCTTAGTTTCAATGAAAA-TATGgtgagccacc ... cttctaacagGAAAGAGAAGTTAAATTTTTCACTGAAACAGAGGAGAACA
EST: GTTACCGTTGTGGAAATGTAGCTTCTATTCTTAGTTTCAATGAAAATATG GAAAGAGAAGTTAAATTTTTCACTGAAACAGAGGAGAACAACCAGATGAGAEST: gi|31464149|gb|CD406177.1|CD406177
genomic: GTTACCGTTGTGGAAATGTAGCTTCTATTCTTAGTTTCAATGAAAATATGgtgagccacc ... cttctaacagGAAAGAGAAGTTAAATTTTTCACTGAAACAGAGGAGAACAACCAGATGAGA
EST: GTTACCGTTGTGGAAATGTAGCTTCTATTCTTAGTTTCAATGAAAATATG GAAAGAGAAGTTAAATTTTTCACTGAAACAGAGGAGAACAACCAGTATGAGEST: gi|254340657|gb|GR854385.1|GR854385
genomic: GTTACCGTTGTGGAAATGTAGCTTCTATTCTTAGTTTCAATGAAAATATGgtgagccacc ... cttctaacagGAAAGAGAAGTTAAATTTTTCACTGAAACAGAGGAGAACAACCAG-ATGAG
EST: GTTACCGTTGTGGAAATGTAGCTTCTATTCTTAGTTTCAATGAAAATATG GAAAGAGAAGTTAAATTTTTCACTGAAACAGAGGAGAACAACCAGATGAGAEST: gi|209728248|gb|BW651683.1|BW651683
genomic: GTTACCGTTGTGGAAATGTAGCTTCTATTCTTAGTTTCAATGAAAATATGgtgagccacc ... cttctaacagGAAAGAGAAGTTAAATTTTTCACTGAAACAGAGGAGAACAACCAGATGAGA
EST: GTTACCGTTGTGGAAATGTAGCTTCTATTCTTAGTTTCAATGAAAATAT- ----GAGAAGTTAAATTTTTCACTGAAACAGAGGAGAACAACCAGATGAGAEST: gi|213593175|gb|DB975366.1|DB975366
genomic: GTTACCGTTGTGGAAATGTAGCTTCTATTCTTAGTTTCAATGAAAATATGgtgagccacc ... cttctaacagGAAAGAGAAGTTAAATTTTTCACTGAAACAGAGGAGAACAACCAGATGAGA
EST: GTTACCGTTGTGGAAATGTAGCTTCTATTCTTAGTTTCAATGAAAATATG GAAAGAGAAGTTAAATTTTTCACTGAAACAGAGGAGAACAACCAGATGAGAEST: gi|16345163|gb|BI970758.1|BI970758
genomic: GTTACCGTTGTGGAAATGTAGCTTCTATTCTTAGTTTCAATGAAAATATGgtgagccacc ... cttctaacagGAAAGAGAAGTTAAATTTTTCACTGAAACAGAGGAGAACAACCAGATGAGA
EST: GTTACCGTTGTGGAAATGTAGCTTCTATTCTTAGTTTCAATGAAAATATG GAAAGAGAAGTTAAATTTTTCACTGAAACAGAGGAGAACAACCAGATGAGAEST: gi|207791752|gb|GD763659.1|GD763659
genomic: GTTACCGTTGTGGAAATGTAGCTTCTATTCTTAGTTTCAATGAAAATATGgtgagccacc ... cttctaacagGAAAGAGAAGTTAAATTTTTCACTGAAACAGAGGAGAACAACCAGATGAGA
EST: TTAGTTTCAATGAAAATATG GAAAGAGAAGTTAAATTTTTCACTGAAACAGAGGAGAACAACCAGATGAGAEST: gi|31473271|gb|CD415284.1|CD415284
genomic: TTAGTTTCAATGAAAATATGgtgagccacc ... cttctaacagGAAAGAGAAGTTAAATTTTTCACTGAAACAGAGGAGAACAACCAGATGAGA
EST: GTTACCGTTGTGGAAATGTAGCTTCTATTCTTAGTTTCAATGAAAATATG GAAAGAGAAGTTAAATTTTTCACTGAAACAGAGGAGAACAACCAGATGAGAEST: gi|254337376|gb|GR849329.1|GR849329
genomic: GTTACCGTTGTGGAAATGTAGCTTCTATTCTTAGTTTCAATGAAAATATGgtgagccacc ... cttctaacagGAAAGAGAAGTTAAATTTTTCACTGAAACAGAGGAGAACAACCAGATGAGA
EST: GTTACCGTTGTGGAAATGTAGCTTCTATTCTTAGTTTCAATGAAAATATG GAAAGAGAAGTTAAATTTTTCACTGAAACAGAGGAGAACAACCAGATGAGAEST: gi|5753202|gb|AI960489.1|AI960489
genomic: GTTACCGTTGTGGAAATGTAGCTTCTATTCTTAGTTTCAATGAAAATATGgtgagccacc ... cttctaacagGAAAGAGAAGTTAAATTTTTCACTGAAACAGAGGAGAACAACCAGATGAGA
EST: GTTACCGTTGTGGAAATGTAGCTTCTATTCTTAGTTTCAATGAAAATATG AAAAGAGAAGTTAAATTTTTCACTGAAACAGAGGAGAACAACCAGATGAGA
genomic: GTTACCGTTGTGGAAATGTAGCTTCTATTCTTAGTTTCAATGAAAATATGgtgagccacc ... cttctaacagGAAAGAGAAGTTAAATTTTTCACTGAAACAGAGGAGAACAACCAGATGAGA
gcttacaagttaacatcattttgtgtatagattcttacatcttttcttctaacagGAAAGAGAAGTTAAATTTTTCACTGAAACAGAGGAGAACAACCAGATGAGAGGCCCCAGGACAGGCGTCCCATATTTCTTATAAATTGATGTTTTTCTTG
ttcttac putative branch site (score: 2)
ttcttacatcttttct CT-rich tract
atcatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tggcaacatctgttatgatgcttggattttcttggttgtgttcatgcttacaagttaacatcattttgtgtatagattcttacatcttttcttctaacagGAAAGAGAAGTTAAATTTTTCACTGAAACAGAGGAGAACAACCAGATGAGAGGCCCCAGGACAGGCGTCCCATATTTCTTATAAATTGATGTTTTTCTTG
- - - catctgt
- - - - - - - -tgatgct
- - - - - - - - - - - - - - - - -ggttgtg
- - - - - - - - - - - - - - - - - - - - -tcatgct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttttgtg