1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...gctaggtctactatttgttctcctcaaattaacttgtgttgtgccgtgttgcagattttcgttttacatggtactgaccagagacaattaaacatttcagGTTAAAGAGATCCTTATTGAGGAGTCAAATGTGCAGCCTGTCAACAGTCCAGTGACGGTTTGTGGTGATATTCATGGTCAGTTTCATGATCTAATGAAAC
species | Glycine max |
transcript | GLYMA0048S00290.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CTTTGCGAATAT GTTAAAGAGATCCTTATTGAGGAGTCAAATGTGCAGCCTGTCAACAGTCCAEST: gi|209728247|gb|BW651682.1|BW651682
genomic: CTTTGCGAATATgtatttttgc ... aacatttcagGTTAAAGAGATCCTTATTGAGGAGTCAAATGTGCAGCCTGTCAACAGTCCA
EST: AGGATGGCCAGCACCTTCTCGAAGAGGAGCTTCAACTTCTTTGCGAATAT GTTAAAGAGATCCTTATTGAGGAGTCAAATGTGCAGCCTGTCAACAGTCCAEST: gi|298172509|gb|HO019549.1|HO019549
genomic: AGGATGGCCAGCACCTTCTCGAAGAGGAGCTTCAACTTCTTTGCGAATATgtatttttgc ... aacatttcagGTTAAAGAGATCCTTATTGAGGAGTCAAATGTGCAGCCTGTCAACAGTCCA
EST: AGGATGGCCAGCACCTTCTCGAAGAGGAGCTTCAACTTCTTTGCGAATAT GTTAAAGAGATCCTTATTGAGGAGTCAAATGTGCAGCCTGTCAACAGTCCAEST: gi|151410851|gb|EV280666.1|EV280666
genomic: AGGATGGCCAGCACCTTCTCGAAGAGGAGCTTCAACTTCTTTGCGAATATgtatttttgc ... aacatttcagGTTAAAGAGATCCTTATTGAGGAGTCAAATGTGCAGCCTGTCAACAGTCCA
EST: AGGATGGCCAGCACCTTCTCGAAGAGGAGCTTCAACTTCTTTGCGAATAT GTTAAAGAGATCCTTATTGAGGAGTCAAATGTGCAGCCTGTCAACAGTCCAEST: gi|213603385|gb|DB966616.1|DB966616
genomic: AGGATGGCCAGCACCTTCTCGAAGAGGAGCTTCAACTTCTTTGCGAATATgtatttttgc ... aacatttcagGTTAAAGAGATCCTTATTGAGGAGTCAAATGTGCAGCCTGTCAACAGTCCA
EST: AGGATGGCCAGCACCTTCTCGAAGAGGAGCTTCAACTTCTTTGCGAATAT GTTAAAGAGATCCTTATTGAGGAGTCAAATGTGCAGCCTGTCAACAGTCCAEST: gi|192323250|gb|FK018961.1|FK018961
genomic: AGGATGGCCAGCACCTTCTCGAAGAGGAGCTTCAACTTCTTTGCGAATATgtatttttgc ... aacatttcagGTTAAAGAGATCCTTATTGAGGAGTCAAATGTGCAGCCTGTCAACAGTCCA
EST: AGGATGGCCAGCACCTTCTCGAAGAGGAGCTTCAACTTCTTTGCGAATAT GTTAAAGAGATCCTTATTGAGGAGTCAAATGTGCAGCCTGTCAACAGTCCAEST: gi|298178347|gb|HO024082.1|HO024082
genomic: AGGATGGCCAGCACCTTCTCGAAGAGGAGCTTCAACTTCTTTGCGAATATgtatttttgc ... aacatttcagGTTAAAGAGATCCTTATTGAGGAGTCAAATGTGCAGCCTGTCAACAGTCCA
EST: AGGATGGCCAGCACCTTCTCGAAGAGGAGCTTCAACTTCTTTGCGAATAT GTTAAAGAGATCCTTATTGGGGAGTCAAATGTGCAGCCTGTCAACAGTCCAEST: gi|207708160|gb|GD692012.1|GD692012
genomic: AGGATGGCCAGCACCTTCTCGAAGAGGAGCTTCAACTTCTTTGCGAATATgtatttttgc ... aacatttcagGTTAAAGAGATCCTTATTGAGGAGTCAAATGTGCAGCCTGTCAACAGTCCA
EST: AGGATGGCCAGCACCTTCTCGAAGAGGAGCTTCAACTTCTTTGCGAATAT GTTAAAGAGATCCTTATTGAGGAGTCAAATGTGCAGCCTGTCAACAGTCCAEST: gi|192296025|gb|FG989419.1|FG989419
genomic: AGGATGGCCAGCACCTTCTCGAAGAGGAGCTTCAACTTCTTTGCGAATATgtatttttgc ... aacatttcagGTTAAAGAGATCCTTATTGAGGAGTCAAATGTGCAGCCTGTCAACAGTCCA
EST: AGGATGGCCAGCACCTTCTCGAAGAGGAGCTTCAACTTCTTTGCGAATAT GTTAAAGAGATCCTTATTGAGGAGTCAAATGTGCAGCCTGTCAACAGTCCAEST: gi|298187406|gb|HO034555.1|HO034555
genomic: AGGATGGCCAGCACCTTCTCGAAGAGGAGCTTCAACTTCTTTGCGAATATgtatttttgc ... aacatttcagGTTAAAGAGATCCTTATTGAGGAGTCAAATGTGCAGCCTGTCAACAGTCCA
EST: AGGATGGCCAGCACCTTCTCGAAGAGGAGCTTCAACTTCTTTGCGAATAT GTTAAAGAGATCCTTATTGAGGAGTCAAATGTGCAGCCTGTCAACAGTCCAEST: gi|209707319|gb|BW670611.1|BW670611
genomic: AGGATGGCCAGCACCTTCTCGAAGAGGAGCTTCAACTTCTTTGCGAATATgtatttttgc ... aacatttcagGTTAAAGAGATCCTTATTGAGGAGTCAAATGTGCAGCCTGTCAACAGTCCA
EST: AGGATGGCCAGCACCTTCTCGAAGAGGAGCTTCAACTTCTTTGCGAATAT GTTAAAGAGATCCTTATTGAGGAGTCAAATGTGCAGCCTGTCAACAGTCCAEST: gi|208275394|gb|GE079386.1|GE079386
genomic: AGGATGGCCAGCACCTTCTCGAAGAGGAGCTTCAACTTCTTTGCGAATATgtatttttgc ... aacatttcagGTTAAAGAGATCCTTATTGAGGAGTCAAATGTGCAGCCTGTCAACAGTCCA
EST: CTTCTTTGCGAATAT GTTAAAGAGATCCTTATTGAGGAGTCAAATGTGCAGCCTGTCAACAGTCCAEST: gi|298190555|gb|HO032676.1|HO032676
genomic: CTTCTTTGCGAATATgtatttttgc ... aacatttcagGTTAAAGAGATCCTTATTGAGGAGTCAAATGTGCAGCCTGTCAACAGTCCA
EST: AGGATGGCCAGCACCTTCTCGAAGAGGAGCTTCAACTTCTTTGCGAATAT GTTAAAGAGATCCTTATTGAGGAGTCAAATGTGCAGCCTGTCAACAGTCCAEST: gi|298188878|gb|HO035571.1|HO035571
genomic: AGGATGGCCAGCACCTTCTCGAAGAGGAGCTTCAACTTCTTTGCGAATATgtatttttgc ... aacatttcagGTTAAAGAGATCCTTATTGAGGAGTCAAATGTGCAGCCTGTCAACAGTCCA
EST: AGGATGGCCAGCACCTTCTCGAAGAGGAGCTTCAACTTCTTTGCGAATAG GTTAAAGAGATCCTTATTGAGGAGTCAAATGTGCAGCCTGTCAACAGTCCGEST: gi|308098123|gb|HO761294.1|HO761294
genomic: AGGATGGCCAGCACCTTCTCGAAGAGGAGCTTCAACTTCTTTGCGAATATgtatttttgc ... aacatttcagGTTAAAGAGATCCTTATTGAGGAGTCAAATGTGCAGCCTGTCAACAGTCCA
EST: AGGATGGCCAGCACCTTCTCGAAGAGGAGCTTCAACTTCTTTGCGAATAT GTTAAAGAGATCCTTATTGAGGAGTCAAATGTGCAGCCTGTCAACAGTCCA
genomic: AGGATGGCCAGCACCTTCTCGAAGAGGAGCTTCAACTTCTTTGCGAATATgtatttttgc ... aacatttcagGTTAAAGAGATCCTTATTGAGGAGTCAAATGTGCAGCCTGTCAACAGTCCA
gtgttgcagattttcgttttacatggtactgaccagagacaattaaacatttcagGTTAAAGAGATCCTTATTGAGGAGTCAAATGTGCAGCCTGTCAACAGTCCAGTGACGGTTTGTGGTGATATTCATGGTCAGTTTCATGATCTAATGAAAC
tactgac putative branch site (score: 1)
acaattaaacattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gctaggtctactatttgttctcctcaaattaacttgtgttgtgccgtgttgcagattttcgttttacatggtactgaccagagacaattaaacatttcagGTTAAAGAGATCCTTATTGAGGAGTCAAATGTGCAGCCTGTCAACAGTCCAGTGACGGTTTGTGGTGATATTCATGGTCAGTTTCATGATCTAATGAAAC
- - - - - - - - - tctcctc
- - - - - - - - - - - - - - - -acttgtg
- - - - - - - - - - - - - - - - - - - ttgtgcc
- - - - - - - - - - - - - - - - - - - - - - - tgttgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctgacca