1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...atgcttatttgtttaacataaatattatttatattgctttttaaaggtgaatattcatatatttgtttgaatatattaattaatatccattttatgacagATAAGGGTCATTGAGAGGAACTGTGAAATTCCTCATGAGGGACCATTTTGTGATCTGATGTGGAGTGATCCTGAAGATATCGAAACATGGGCAGTCAGTC
species | Glycine max |
transcript | GLYMA0048S00290.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TGCTTTGTGTTCATGGTGGCCTTTCTCCAGACATTCGATCAATAGATCAG ATAAGGGTCATTGAGAGGAACTGTGAAATTCCTCATGAGGGACCATTTTGTEST: gi|298172509|gb|HO019549.1|HO019549
genomic: TGCTTTGTGTTCATGGTGGCCTTTCTCCAGACATTCGATCAATAGATCAGgttctctctc ... tttatgacagATAAGGGTCATTGAGAGGAACTGTGAAATTCCTCATGAGGGACCATTTTGT
EST: TGTTTTGTGTTCATGGTGGCCTTTCTCCAGACATTCGATCAATAGATCAG ATAAGGGTCATTGAGAGGAACTGTGAGATTCCTCATGAGGGACCATTTTGTEST: gi|254340656|gb|GR854384.1|GR854384
genomic: TGCTTTGTGTTCATGGTGGCCTTTCTCCAGACATTCGATCAATAGATCAGgttctctctc ... tttatgacagATAAGGGTCATTGAGAGGAACTGTGAAATTCCTCATGAGGGACCATTTTGT
EST: TGCTTTGTGTTCATGGTGGCCTTTCTCCAGACATTCGATCAATAGATCAG ATAAGGGTCATTGAGAGGAACTGTGAAATTCCTCATGAGGGACCATTTTGTEST: gi|151410851|gb|EV280666.1|EV280666
genomic: TGCTTTGTGTTCATGGTGGCCTTTCTCCAGACATTCGATCAATAGATCAGgttctctctc ... tttatgacagATAAGGGTCATTGAGAGGAACTGTGAAATTCCTCATGAGGGACCATTTTGT
EST: TGCTTTGTGTTCATGGTGGCCTTTCTCCAGACATTCGATCAATAGATCAG ATAAGGGTCATTGAGAGGAACTGTGAAATTCCTCATGAGGGACCATTTTGTEST: gi|192323250|gb|FK018961.1|FK018961
genomic: TGCTTTGTGTTCATGGTGGCCTTTCTCCAGACATTCGATCAATAGATCAGgttctctctc ... tttatgacagATAAGGGTCATTGAGAGGAACTGTGAAATTCCTCATGAGGGACCATTTTGT
EST: TGCTTTGTGTTCATGGTGGCCTTTCTCCAGACATTCGATCAATAGATCAG ATAAGGGTCATTGAGAGGAACTGTGAAATTCCTCATGAGGGACCATTTTGTEST: gi|298178347|gb|HO024082.1|HO024082
genomic: TGCTTTGTGTTCATGGTGGCCTTTCTCCAGACATTCGATCAATAGATCAGgttctctctc ... tttatgacagATAAGGGTCATTGAGAGGAACTGTGAAATTCCTCATGAGGGACCATTTTGT
EST: TGCTTTGTGTCCATGGTGGCCTTTCTCCAGACATTCGATCAATAGATCAG ATAAGGGTCATTGAGAGGAACTGTEST: gi|192296025|gb|FG989419.1|FG989419
genomic: TGCTTTGTGTTCATGGTGGCCTTTCTCCAGACATTCGATCAATAGATCAGgttctctctc ... tttatgacagATAAGGGTCATTGAGAGGAACTGT
EST: TGCTTTGTGTTCATGGTGGCCTTTCTCCAGACATTCGATCAATAGATCAG ATAAGGGTCATTGAGAGGAACTGTGAAATTCCTCATGAGGGACCATTTTGTEST: gi|254340657|gb|GR854385.1|GR854385
genomic: TGCTTTGTGTTCATGGTGGCCTTTCTCCAGACATTCGATCAATAGATCAGgttctctctc ... tttatgacagATAAGGGTCATTGAGAGGAACTGTGAAATTCCTCATGAGGGACCATTTTGT
EST: TGCTTTGTGTTCATGGTGGCCTTTCTCCAGACATTCGATCAATAGATCAG ATAAGGGTCATTGAGAGGAACTGTGAAATTCCTCATGAGGGACCATTTTGTEST: gi|209728248|gb|BW651683.1|BW651683
genomic: TGCTTTGTGTTCATGGTGGCCTTTCTCCAGACATTCGATCAATAGATCAGgttctctctc ... tttatgacagATAAGGGTCATTGAGAGGAACTGTGAAATTCCTCATGAGGGACCATTTTGT
EST: TCCAGACATTCGATCAATAGATCAG ATAAGGGTCA-TGAGAGGGAACTGTGAAATTCCTCATGAGGGACCATTTTGEST: gi|193307325|gb|FK271109.1|FK271109
genomic: TCCAGACATTCGATCAATAGATCAGgttctctctc ... tttatgacagATAAGGGTCATTGAGA-GGAACTGTGAAATTCCTCATGAGGGACCATTTTG
EST: CAATAGATCAG ATAAGGGTCATTGAGAGGAACTGTGAAATTCCTCATGAGGGACCATTTTGTEST: gi|16345163|gb|BI970758.1|BI970758
genomic: CAATAGATCAGgttctctctc ... tttatgacagATAAGGGTCATTGAGAGGAACTGTGAAATTCCTCATGAGGGACCATTTTGT
EST: TGCTTTGTGTTCATGGTGGCCTTTCTCCAGACATTCGATCAATAGATCAG ATAAGGGTCATTGAGAGGAACTGTGAAATTCCTCATGAGGGACCATTTTGTEST: gi|31473271|gb|CD415284.1|CD415284
genomic: TGCTTTGTGTTCATGGTGGCCTTTCTCCAGACATTCGATCAATAGATCAGgttctctctc ... tttatgacagATAAGGGTCATTGAGAGGAACTGTGAAATTCCTCATGAGGGACCATTTTGT
EST: TCAATAGATCAG ATAAGGGTCATTGAGAGGAACTGTGAAATTCCTCATGAGGGACCATTTTGT
genomic: TCAATAGATCAGgttctctctc ... tttatgacagATAAGGGTCATTGAGAGGAACTGTGAAATTCCTCATGAGGGACCATTTTGT
ggtgaatattcatatatttgtttgaatatattaattaatatccattttatgacagATAAGGGTCATTGAGAGGAACTGTGAAATTCCTCATGAGGGACCATTTTGTGATCTGATGTGGAGTGATCCTGAAGATATCGAAACATGGGCAGTCAGTC
tccatttt CT-rich tract
atatatttgtttgaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atgcttatttgtttaacataaatattatttatattgctttttaaaggtgaatattcatatatttgtttgaatatattaattaatatccattttatgacagATAAGGGTCATTGAGAGGAACTGTGAAATTCCTCATGAGGGACCATTTTGTGATCTGATGTGGAGTGATCCTGAAGATATCGAAACATGGGCAGTCAGTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
-tgcttat
- - - - - - - - - - - - - - - - - tgctttt