1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
ATTTTGTGATCTGATGTGGAGTGATCCTGAAGATATCGAAACATGGGCAGTCAGTCCTCGTGGAGCTGGTTGGCTTTTTGGATCCCGGGTCACTTCTGAGgtaatgccaattgtgaattgcttattgaattgagtattgaacattatgtgtgaattttacaaatgccttgttttcatgcag
species | Glycine max |
transcript | GLYMA0048S00290.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: TCAGTCCTCGTGGAGCTGGTTGGCTTTTTGGATCCCGGGTCACTTCTGAG TTCAATAACATAAACAATCTTGATCTGGTTTGTCGGGCACACCAACTCGTTEST: gi|151410851|gb|EV280666.1|EV280666
genomic: TCAGTCCTCGTGGAGCTGGTTGGCTTTTTGGATCCCGGGTCACTTCTGAGgtaatgccaa ... tttcatgcagTTCAATAACATAAACAATCTTGATCTGGTTTGTCGGGCACACCAACTCGTT
EST: TCAGTCCTCGTGGAGCTGGTTGGCTTTTTGGATCCCGGGTCACTTCTGAG TTCAATAACATAAACAATCTTGATCTGGTTTGTCGGGCACACCAACTCGTTEST: gi|213611336|gb|DB983956.1|DB983956
genomic: TCAGTCCTCGTGGAGCTGGTTGGCTTTTTGGATCCCGGGTCACTTCTGAGgtaatgccaa ... tttcatgcagTTCAATAACATAAACAATCTTGATCTGGTTTGTCGGGCACACCAACTCGTT
EST: CTTTTTGGATCCCGGGTCACTTCTGAG TTCAATAACATAAACAATCTTGATCTGGTTTGTCGGGCACACCAACTCGTTEST: gi|192323250|gb|FK018961.1|FK018961
genomic: CTTTTTGGATCCCGGGTCACTTCTGAGgtaatgccaa ... tttcatgcagTTCAATAACATAAACAATCTTGATCTGGTTTGTCGGGCACACCAACTCGTT
EST: TCAGTCCTCGTGGAGCTGGTTGGCTTTTTGGATCCCGGGTCACTTCTGAG TTCAATAACATAAACAATCTTGATCTGGTTTGTCGGGCACACCAACTCGEST: gi|192296025|gb|FG989419.1|FG989419
genomic: TCAGTCCTCGTGGAGCTGGTTGGCTTTTTGGATCCCGGGTCACTTCTGAGgtaatgccaa ... tttcatgcagTTCAATAACATAAACAATCTTGATCTGGTTTGTCGGGCACACCAACTCG
EST: TCAGTCCTCGTGGAGCTGGTTGGCTTTTTGGATCCCGGGTCACTTCTGAG TTCAATAACATAAACAATCTTGATCTGGTTTGTCGGGCACACCAACTCGTTEST: gi|254340657|gb|GR854385.1|GR854385
genomic: TCAGTCCTCGTGGAGCTGGTTGGCTTTTTGGATCCCGGGTCACTTCTGAGgtaatgccaa ... tttcatgcagTTCAATAACATAAACAATCTTGATCTGGTTTGTCGGGCACACCAACTCGTT
EST: TCAGTCCTCGTGGAGCTGGTTGGCTTTTTGGATCCCGGGTCACTTCTGAG TTCAATAACATAAACAATCTTGATCTGGTTTGTCGGGCACACCAACTCGTTEST: gi|209728248|gb|BW651683.1|BW651683
genomic: TCAGTCCTCGTGGAGCTGGTTGGCTTTTTGGATCCCGGGTCACTTCTGAGgtaatgccaa ... tttcatgcagTTCAATAACATAAACAATCTTGATCTGGTTTGTCGGGCACACCAACTCGTT
EST: TCAGTCCTCGTGGAGCTGGTTGGCTTTTTGGATCCCGGGTCACTTCTGAG TTCAATAACATAAACAATCTTGATCTGGTTTGTCGGGCACACCAACTCGTTEST: gi|213593175|gb|DB975366.1|DB975366
genomic: TCAGTCCTCGTGGAGCTGGTTGGCTTTTTGGATCCCGGGTCACTTCTGAGgtaatgccaa ... tttcatgcagTTCAATAACATAAACAATCTTGATCTGGTTTGTCGGGCACACCAACTCGTT
EST: TCAGTCCTCGTGGAGCTGGTTGGCTTTTTGGATCCCGGGTCACTTCTGAG TTCAATAACATAAACAATCTTGATCTGGTTTGTCGGGCACACCAACTCGTTEST: gi|193307325|gb|FK271109.1|FK271109
genomic: TCAGTCCTCGTGGAGCTGGTTGGCTTTTTGGATCCCGGGTCACTTCTGAGgtaatgccaa ... tttcatgcagTTCAATAACATAAACAATCTTGATCTGGTTTGTCGGGCACACCAACTCGTT
EST: CAGTCCTCGTGGAGCTGGTTGGTCTTTTTGGATCCCGGGTCACTTCTGAG TTCAATAACATAAACAATCTTGATCTGGTTTGTCGGGCACACCAACTCGTTEST: gi|16345163|gb|BI970758.1|BI970758
genomic: CAGTCCTCGTGGAGCTGGTTGG-CTTTTTGGATCCCGGGTCACTTCTGAGgtaatgccaa ... tttcatgcagTTCAATAACATAAACAATCTTGATCTGGTTTGTCGGGCACACCAACTCGTT
EST: TCAGTCCTCGTGGAGCTGGTTGGCTTTTTGGATCCCGGGTCACTTCTGAG TTCAATAACATAAACAATCTTGATCTGGTTTGTCGGGCACACCAACTCGTTEST: gi|31473271|gb|CD415284.1|CD415284
genomic: TCAGTCCTCGTGGAGCTGGTTGGCTTTTTGGATCCCGGGTCACTTCTGAGgtaatgccaa ... tttcatgcagTTCAATAACATAAACAATCTTGATCTGGTTTGTCGGGCACACCAACTCGTT
EST: CAGTCCTCGTGGAGCTTGGTTGGCTTTTTGGATCCCGGGTCACTTCTGAG TTCAATAACATAAACTATCTTGATCTGGTTTGTCNGGGCACACCAACTCGTEST: gi|254337376|gb|GR849329.1|GR849329
genomic: CAGTCCTCGTGGAGC-TGGTTGGCTTTTTGGATCCCGGGTCACTTCTGAGgtaatgccaa ... tttcatgcagTTCAATAACATAAACAATCTTGATCTGGTTTGTC-GGGCACACCAACTCGT
EST: TCAGTCCTCGTGGAGCTGGTTGGCTTTTTGGATCCCGGGTCACTTCTGAG TTCAATAACATAAACAATCTTGATCTGGTTTGTCGGGCACACCAACTCGTTEST: gi|5753202|gb|AI960489.1|AI960489
genomic: TCAGTCCTCGTGGAGCTGGTTGGCTTTTTGGATCCCGGGTCACTTCTGAGgtaatgccaa ... tttcatgcagTTCAATAACATAAACAATCTTGATCTGGTTTGTCGGGCACACCAACTCGTT
EST: TCAGTCCTCGTGGAGCTGGTTGGCTTTTTGGATCCCGGGTCACTTCTGAG TTCAATAACATAAACAATCTTGATCTGGTTTGTCGGGCACACCAACTCGTT
genomic: TCAGTCCTCGTGGAGCTGGTTGGCTTTTTGGATCCCGGGTCACTTCTGAGgtaatgccaa ... tttcatgcagTTCAATAACATAAACAATCTTGATCTGGTTTGTCGGGCACACCAACTCGTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATTTTGTGATCTGATGTGGAGTGATCCTGAAGATATCGAAACATGGGCAGTCAGTCCTCGTGGAGCTGGTTGGCTTTTTGGATCCCGGGTCACTTCTGAGgtaatgccaattgtgaattgcttattgaattgagtattgaacattatgtgtgaattttacaaatgccttgttttcatgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT