1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
GTTTTCCCACCACTCAAAAGGCCAAGGTAGCTGATGTTTCTAAATTTGGAAGAGCGgtgagtgtattttacataaagaaatattagaatgcaatccatgtttttgttgttgctttaaatttaaggtcaattactaagcctggatgaatagaagatc...
species | Glycine max |
transcript | GLYMA0041S00280.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: CCACCACTCAAAAGGCCAAGGTAGCTGATGTTTCTAAATTTGGAAGAGCG GCCAANNNGAGGAGTTCATCCTGGTGGGTCAAGTTTTTCCTCCAGATTAACEST: gi|9205193|gb|BE331417.1|BE331417
genomic: CCACCACTCAAAAGGCCAAGGTAGCTGATGTTTCTAAATTTGGAAGAGCGgtgagtgtat ... ctggcttcagGCCAAGATGAGGAGTTCATCCTGGTGGGTCAAGTTTTTCCTCCAGATTAAC
EST: CCACCACTCAAAAGGCCAAGGTAGCTGATGTTTCTAAATTTGGAAGAGCG GCCAAGATGAGGAGTTCATCCTGGTGGGTCAAGTTTTTCCTCCAGATTAACEST: gi|193527330|gb|FK487572.1|FK487572
genomic: CCACCACTCAAAAGGCCAAGGTAGCTGATGTTTCTAAATTTGGAAGAGCGgtgagtgtat ... ctggcttcagGCCAAGATGAGGAGTTCATCCTGGTGGGTCAAGTTTTTCCTCCAGATTAAC
EST: GGTAGCTGATGTTTCTAAATTTGGAAGAGCG GCCAAGATGAGGAGTTCATCCTGGTGGGTCAAGTTTTTCCTCCAGATTAACEST: gi|31465818|gb|CD407846.1|CD407846
genomic: GGTAGCTGATGTTTCTAAATTTGGAAGAGCGgtgagtgtat ... ctggcttcagGCCAAGATGAGGAGTTCATCCTGGTGGGTCAAGTTTTTCCTCCAGATTAAC
EST: CCACCACTCAAAAGGCCAAGGTAGCTGATGTTTCTAAATTTGGAAGAGCG GCCAAGATGAGGAGTTCATCCTGGTGGGTCAAGTTTTTCCTCCAGATTAAC
genomic: CCACCACTCAAAAGGCCAAGGTAGCTGATGTTTCTAAATTTGGAAGAGCGgtgagtgtat ... ctggcttcagGCCAAGATGAGGAGTTCATCCTGGTGGGTCAAGTTTTTCCTCCAGATTAAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTTTCCCACCACTCAAAAGGCCAAGGTAGCTGATGTTTCTAAATTTGGAAGAGCGgtgagtgtattttacataaagaaatattagaatgcaatccatgtttttgttgttgctttaaatttaaggtcaattactaagcctggatgaatagaagatc
- - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - taaagaaa