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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAGGTTTGTTTCTCGTTGGCTATGTGTATAGAGGCTCAGgtattttgttattattgttttcattttgttactatgatgtggtttttggctcgttttgtttatctatttaatttaatttaatgtcacttttttttttctttcctatgtag

Basic information

species Glycine max
transcript GLYMA0041S00280.1
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|14125816|gb|BG790254.1|BG790254
EST:     GGAGGTTTGTTTCTCGTTGGCTATGTGTATAGAGGCTCAG                         GTGGAATTGGAAACCGTATAGAATCTGTTAGCAGGGTTGAAG
genomic: GGAGGTTTGTTTCTCGTTGGCTATGTGTATAGAGGCTCAGgtattttgtt ... tcctatgtagGTGGAATTGGAAACCGTATAGAATCTGTTAGCAGGGTTGAAG
EST: gi|4397134|gb|AI496131.1|AI496131
EST:     GGAGGTTTGTTTCTCGCTGGCTATGTGTATAGAGGCTCAG                         GTGGAATTGGAAACCGTATAGAATCTGTTAGCAGGGTTGAAG
genomic: GGAGGTTTGTTTCTCGTTGGCTATGTGTATAGAGGCTCAGgtattttgtt ... tcctatgtagGTGGAATTGGAAACCGTATAGAATCTGTTAGCAGGGTTGAAG
EST: gi|7684885|gb|AW755533.1|AW755533
EST:     GGAGGTTTGTTTCTCGTTGGCTATGTGTATAGAGGCTCAG                         GTGGAATTGGAAACCGTATAGAATCTGTTAGCAGGGTTGAAG
genomic: GGAGGTTTGTTTCTCGTTGGCTATGTGTATAGAGGCTCAGgtattttgtt ... tcctatgtagGTGGAATTGGAAACCGTATAGAATCTGTTAGCAGGGTTGAAG
EST: gi|10237051|gb|BE805939.1|BE805939
EST:     GGAGGTTTGTTTCTCGTTGGCTATGTGTATAGAGGCTCAG                         GTGGAATTGGAAACCGTATAGAATCTGTTAGCAGGGTTGAAG
genomic: GGAGGTTTGTTTCTCGTTGGCTATGTGTATAGAGGCTCAGgtattttgtt ... tcctatgtagGTGGAATTGGAAACCGTATAGAATCTGTTAGCAGGGTTGAAG