1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...ttaaatatactgtttgtgctggtagcttaaaagactatcgtagtaatagtctataatctcttgggcctgccactaacatctgataatatctataatgaagGTTTTCCCACCACTCAAAAGGCCAAGGTAGCTGATGTTTCTAAATTTGGAAGAGCG
species | Glycine max |
transcript | GLYMA0041S00280.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TCTTCCGGATTTGGTGAGGGTAGCATCTGATGGTGTAGTGATATTTACTG GTTTTCCCACCACTCAAAAGGCCAAGGTAGCTGATGTTTCTAAATTTGGAAEST: gi|193705065|gb|FK644009.1|FK644009
genomic: TCTTCCGGATTTGGTGAGGGTAGCATCTGATGGTGTAGTGATATTTACTGgtaagagcat ... tataatgaagGTTTTCCCACCACTCAAAAGGCCAAGGTAGCTGATGTTTCTAAATTTGGAA
EST: TCTTCCGGATTTGGTGAGGGTAGCATCTGATGGTGTAGTGATATTTACTG GTTTTCCCACCACTEST: gi|9205193|gb|BE331417.1|BE331417
genomic: TCTTCCGGATTTGGTGAGGGTAGCATCTGATGGTGTAGTGATATTTACTGgtaagagcat ... tataatgaagGTTTTCCCACCACT
EST: TCTTCCGGATTTGGTGAGGGTAGCATCTGATGGTGTAGTGATATTTACTG GTTTTCCCACCACTCAAAAGGCCAAGGTAGCTGATGTTTCTAAATTTGGAAEST: gi|5606518|gb|AI900616.1|AI900616
genomic: TCTTCCGGATTTGGTGAGGGTAGCATCTGATGGTGTAGTGATATTTACTGgtaagagcat ... tataatgaagGTTTTCCCACCACTCAAAAGGCCAAGGTAGCTGATGTTTCTAAATTTGGAA
EST: TCTTCCGGATTTGGTGAGGGTAGCATCTGATGGTGTAGTGATATTTACTG GTTTTCCCACCACTCAAAAGGCCAAGGTAGCTGATGTTTCTAAATTTGGAAEST: gi|31465818|gb|CD407846.1|CD407846
genomic: TCTTCCGGATTTGGTGAGGGTAGCATCTGATGGTGTAGTGATATTTACTGgtaagagcat ... tataatgaagGTTTTCCCACCACTCAAAAGGCCAAGGTAGCTGATGTTTCTAAATTTGGAA
EST: TCTTCCGGATTTGGTGAGGGTAGCATCTGATGGTGTAGTGATATTTACTG GTTTTCCCACCACTCAAAAGGCCAAGGTAGCTGATGTTTCTAAATTTGGAA
genomic: TCTTCCGGATTTGGTGAGGGTAGCATCTGATGGTGTAGTGATATTTACTGgtaagagcat ... tataatgaagGTTTTCCCACCACTCAAAAGGCCAAGGTAGCTGATGTTTCTAAATTTGGAA
atagtctataatctcttgggcctgccactaacatctgataatatctataatgaagGTTTTCCCACCACTCAAAAGGCCAAGGTAGCTGATGTTTCTAAATTTGGAAGAGCG
ataatatctataatga TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttaaatatactgtttgtgctggtagcttaaaagactatcgtagtaatagtctataatctcttgggcctgccactaacatctgataatatctataatgaagGTTTTCCCACCACTCAAAAGGCCAAGGTAGCTGATGTTTCTAAATTTGGAAGAGCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - -ctgtttg
- - - - - - - - tgctggt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcctgcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -actaaca