1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
GTGGAATTGGAAACCGTATAGAATCTGTTAGCAGGGTTGAAGgtagttttaattttctttccctctggattgtgagaatttattgcatggtcccagagcaccccaatgaaaacaaaactaagggggtctatctagctctaca...
species | Glycine max |
transcript | GLYMA0041S00280.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: GGAAACCGTATAGAATCTGTTAGCAGGGTTGAAG GTGATTATTTGTGCAGTAGAGAGGTCCAACAAGCAATTCCCATTTTACAGAEST: gi|14125816|gb|BG790254.1|BG790254
genomic: GGAAACCGTATAGAATCTGTTAGCAGGGTTGAAGgtagttttaa ... ccaaatgcagGTGATTATTTGTGCAGTAGAGAGGTCCAACAAGCAATTCCCATTTTACAGA
EST: GTGGAATTGGAAACCGTATAGAATCTGTTAGCAGGGTTGAAG GTGATTATTTGTGCAGTAGAGAGGTCCAACAAGCAATTCCCATTTTACAGAEST: gi|4397134|gb|AI496131.1|AI496131
genomic: GTGGAATTGGAAACCGTATAGAATCTGTTAGCAGGGTTGAAGgtagttttaa ... ccaaatgcagGTGATTATTTGTGCAGTAGAGAGGTCCAACAAGCAATTCCCATTTTACAGA
EST: GTGGAATTGGAAACCGTATAGAATCTGTTAGCAGGGTTGAAG GTGATTATTTGTGCAGTAGAGAGGTCCAACAAGCAATTCCCATTTTACAGAEST: gi|7684885|gb|AW755533.1|AW755533
genomic: GTGGAATTGGAAACCGTATAGAATCTGTTAGCAGGGTTGAAGgtagttttaa ... ccaaatgcagGTGATTATTTGTGCAGTAGAGAGGTCCAACAAGCAATTCCCATTTTACAGA
EST: GTGGAATTGGAAACCGTATAGAATCTGTTAGCAGGGTTGAAG GTGATTATTTGTGCAGTAGAGAGGTCCAACAAGCAATTCCCATTTTACAGAEST: gi|10237051|gb|BE805939.1|BE805939
genomic: GTGGAATTGGAAACCGTATAGAATCTGTTAGCAGGGTTGAAGgtagttttaa ... ccaaatgcagGTGATTATTTGTGCAGTAGAGAGGTCCAACAAGCAATTCCCATTTTACAGA
EST: GTGGAATTGGAAACCGTATAGAATCTGTTAGCAGGGTTGAAG GTGATTATTTGTGCAGTA
genomic: GTGGAATTGGAAACCGTATAGAATCTGTTAGCAGGGTTGAAGgtagttttaa ... ccaaatgcagGTGATTATTTGTGCAGTA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTGGAATTGGAAACCGTATAGAATCTGTTAGCAGGGTTGAAGgtagttttaattttctttccctctggattgtgagaatttattgcatggtcccagagcaccccaatgaaaacaaaactaagggggtctatctagctctaca
- - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttccctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cacccca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaacaaaa