1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtaggtgggccgttgacttgggcctcgcggcggtgtgggagatcggttgccacactgtgttggtgcgcggggcggattctgcgccgtcgccgaatccttattgagcgctcgtgaactttgtcacctgccctgcgcacacttgtctacacctctgcagGTCGGATAGCAGGCAGCCGGCAGGCGGACGAGGAGACCCTTTCCATCGTCCATCTGTGGCGGGAACCGCCGATCACCGCATAAATAACATTTAGAAGCAG
species | Chlamydomonas reinhardtii |
transcript | EDP09845 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: GCATCATAGAGGAGATGAAGGCCCATGGCTTTCAGG GTCGGATAGCAGGCAGCCGGCAGGCGGACGAGGAGACCCTTEST: gi|23363119|gb|BU650939.1|BU650939
genomic: GCATCATAGAGGAGATGAAGGCCCATGGCTTTCAGGgtaggtgggc ... acctctgcagGTCGGATAGCAGGCAGCCGGCAGGCGGACGAGGAGACCCTT
EST: GCATCATAGAGGAGATGAAGGCCCATGGCTTTCAGG GTCGGATAGCAGGCEST: gi|22073161|gb|BQ822499.1|BQ822499
genomic: GCATCATAGAGGAGATGAAGGCCCATGGCTTTCAGGgtaggtgggc ... acctctgcagGTCGGATAGCAGGC
EST: GCATCATAGAGGAGATGAAGGCCCATGGCTTTCAGG GTCGGATAGCAGGCAGCCGGCAGGCGGACGAGGAGACCCTTTCCATCGTCCEST: gi|23363323|gb|BU651143.1|BU651143
genomic: GCATCATAGAGGAGATGAAGGCCCATGGCTTTCAGGgtaggtgggc ... acctctgcagGTCGGATAGCAGGCAGCCGGCAGGCGGACGAGGAGACCCTTTCCATCGTCC
EST: GCATCATAGAGGAGATGAAGGCCCATGGCTTTCAGG GTCGGATAGCAGGCAGCCGGCAGGCGGACGAGGAGACCCTTTCCATCGTCC
genomic: GCATCATAGAGGAGATGAAGGCCCATGGCTTTCAGGgtaggtgggc ... acctctgcagGTCGGATAGCAGGCAGCCGGCAGGCGGACGAGGAGACCCTTTCCATCGTCC
gagcgctcgtgaactttgtcacctgccctgcgcacacttgtctacacctctgcagGTCGGATAGCAGGCAGCCGGCAGGCGGACGAGGAGACCCTTTCCATCGTCCATCTGTGGCGGGAACCGCCGATCACCGCATAAATAACATTTAGAAGCAG
cacctct CT-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaggtgggccgttgacttgggcctcgcggcggtgtgggagatcggttgccacactgtgttggtgcgcggggcggattctgcgccgtcgccgaatccttattgagcgctcgtgaactttgtcacctgccctgcgcacacttgtctacacctctgcagGTCGGATAGCAGGCAGCCGGCAGGCGGACGAGGAGACCCTTTCCATCGTCCATCTGTGGCGGGAACCGCCGATCACCGCATAAATAACATTTAGAAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC