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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGATTACACGTCTATTTAGTCACCAAGGGGCATGACAGAGCTCTCGGTCGCTGAAATCAAGCACACACATTGGAACAGCAACGTGTATGAGCCCTCAGATgtgagactgcaaggttgaaggccgtgagccagcttgggcgcaaggggagacgcaaaacatcggtcgggtggtggcggcgacccggcccactgacacacacaccggcccactgatacacaccgcgcgtacgttggttgcag

Basic information

species Chlamydomonas reinhardtii
transcript EDP09845
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|14232085|gb|BG850901.1|BG850901
EST:     CTGAAATCAAGCACACACATTGGAACAGCAACGTGTATGAGCCCTCAGAT                         GACACATTCCTGCTAGTGGATGTGCTCCAGGAGTATGCTCGCAAATGGGAG
genomic: CTGAAATCAAGCACACACATTGGAACAGCAACGTGTATGAGCCCTCAGATgtgagactgc ... ttggttgcagGACACATTCCTGCTAGTGGATGTGCTCCAGGAGTATGCTCGCAAATGGGAG
EST: gi|23363119|gb|BU650939.1|BU650939
EST:     CTGAAATCAAGCACACACATTGGAACAGCAACGTGTATGAGCCCTCAGAT                         GACACATTCCTGCTAGTGGATGTGCTCCAGGAGTATGCTCGCAAATGGGAG
genomic: CTGAAATCAAGCACACACATTGGAACAGCAACGTGTATGAGCCCTCAGATgtgagactgc ... ttggttgcagGACACATTCCTGCTAGTGGATGTGCTCCAGGAGTATGCTCGCAAATGGGAG
EST: gi|15703546|gb|BI727851.1|BI727851
EST:     CTGAAATCAAGCACACACATTGGAACAGCAACGTGTATGAGCCCTCAGAT                         GACACATTCCTGCTAGTGGATGTGCTCCAGGAGTATGCTCGCAAATGGGAG
genomic: CTGAAATCAAGCACACACATTGGAACAGCAACGTGTATGAGCCCTCAGATgtgagactgc ... ttggttgcagGACACATTCCTGCTAGTGGATGTGCTCCAGGAGTATGCTCGCAAATGGGAG
EST: gi|6543724|gb|AV389508.1|AV389508
EST:     CTGAAATCAAGCACACACATTGGAACAGCAACGTGTATGAGCCCTCAGAT                         GACACATTCCTGCTAGTGGATGTGCTCCAGGAGTATGCTCGCAAATGGGAG
genomic: CTGAAATCAAGCACACACATTGGAACAGCAACGTGTATGAGCCCTCAGATgtgagactgc ... ttggttgcagGACACATTCCTGCTAGTGGATGTGCTCCAGGAGTATGCTCGCAAATGGGAG
EST: gi|23363323|gb|BU651143.1|BU651143
EST:     CTGAAATCAAGCACACACATTGGAACAGCAACGTGTATGAGCCCTCAGAT                         GACACATTCCTGCTAGTGGATGTGCTCCAGGAGTATGCTCGCAAATGGGAG
genomic: CTGAAATCAAGCACACACATTGGAACAGCAACGTGTATGAGCCCTCAGATgtgagactgc ... ttggttgcagGACACATTCCTGCTAGTGGATGTGCTCCAGGAGTATGCTCGCAAATGGGAG