1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtgagtcgcagtgcaaacgcaccttgcgcaattacggtgtaggcgcagcacgcagctcactcgatcctcggctctccacttgcagTTGCCTGGAGTTGGGCTGCGGCAGTGGCTTCGTCATCACATCGCTAGCGCTGCTCCTACGGCAGCTGTCCTTGCCGGTGCGGGCGCAGCTGCTGGCCATT
species | Chlamydomonas reinhardtii |
transcript | EDP09845 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GATGTGCTCCAGGAGTATGCTCGCAAATGGGAGAGCAACAAGCCAAGATG TTGCCTGGAGTTGGGCTGCGGCAGTGGCTTCGTCATCACATCGCTAGCGCTEST: gi|23363119|gb|BU650939.1|BU650939
genomic: GATGTGCTCCAGGAGTATGCTCGCAAATGGGAGAGCAACAAGCCAAGATGgtgagtcgca ... ccacttgcagTTGCCTGGAGTTGGGCTGCGGCAGTGGCTTCGTCATCACATCGCTAGCGCT
EST: GATGTGCTCCAGGAGTATGCTCGCAAATGGGAGAGCAACAAGCCAAGATG TTGCCTGGAGTTGGGCTGCGGCAGTGGCTTCGTCATCACATCGCTAGCGCTEST: gi|15703546|gb|BI727851.1|BI727851
genomic: GATGTGCTCCAGGAGTATGCTCGCAAATGGGAGAGCAACAAGCCAAGATGgtgagtcgca ... ccacttgcagTTGCCTGGAGTTGGGCTGCGGCAGTGGCTTCGTCATCACATCGCTAGCGCT
EST: GATGTGCTCCAGGAGTATGCTCGCAAATGGGAGAGCAACAAGCCAAGATG TTGCCTGGAGTTGGGCTGCGGCAGTGGCTTCGTCATCACATCGCTAGCGCTEST: gi|6543724|gb|AV389508.1|AV389508
genomic: GATGTGCTCCAGGAGTATGCTCGCAAATGGGAGAGCAACAAGCCAAGATGgtgagtcgca ... ccacttgcagTTGCCTGGAGTTGGGCTGCGGCAGTGGCTTCGTCATCACATCGCTAGCGCT
EST: GATGTGCTCCAGGAGTATGCTCGCAAATGGGAGAGCAACAAGCCAAGATG TTGCCTGGAGTTGGGCTGCGGCAGTGGCTTCGTCATCACATCGCTAGCGCTEST: gi|23363323|gb|BU651143.1|BU651143
genomic: GATGTGCTCCAGGAGTATGCTCGCAAATGGGAGAGCAACAAGCCAAGATGgtgagtcgca ... ccacttgcagTTGCCTGGAGTTGGGCTGCGGCAGTGGCTTCGTCATCACATCGCTAGCGCT
EST: GATGTGCTCCAGGAGTATGCTCGCAAATGGGAGAGCAACAAGCCAAGATG TTGCCTGGAGTTGGGCTGCGGCAGTGGCTTCGTCATCACATCGCTAGCGCT
genomic: GATGTGCTCCAGGAGTATGCTCGCAAATGGGAGAGCAACAAGCCAAGATGgtgagtcgca ... ccacttgcagTTGCCTGGAGTTGGGCTGCGGCAGTGGCTTCGTCATCACATCGCTAGCGCT
attacggtgtaggcgcagcacgcagctcactcgatcctcggctctccacttgcagTTGCCTGGAGTTGGGCTGCGGCAGTGGCTTCGTCATCACATCGCTAGCGCTGCTCCTACGGCAGCTGTCCTTGCCGGTGCGGGCGCAGCTGCTGGCCATT
agctcac putative branch site (score: 3)
ctctccactt putative PPT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagtcgcagtgcaaacgcaccttgcgcaattacggtgtaggcgcagcacgcagctcactcgatcctcggctctccacttgcagTTGCCTGGAGTTGGGCTGCGGCAGTGGCTTCGTCATCACATCGCTAGCGCTGCTCCTACGGCAGCTGTCCTTGCCGGTGCGGGCGCAGCTGCTGGCCATT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT