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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgggtgcagggctgcacgcacttgattgggtgtgggcatggcgtggggatttaccccaagcggagcaacatcaaccagattgcacatctctacgctgcgcttgcgttcacttattactccctgcttgcagCTTCCCAAGCTGCTGTCGCCAACTGGGGAGCTCTTCATGGTCACGGTGACGGAGAATGAGCCCAAGG

Basic information

species Chlamydomonas reinhardtii
transcript EDP09845
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|14232085|gb|BG850901.1|BG850901
EST:     GGGCGGGCGGCTGGAAGGGCCGCCGTGTCATAGACAGGGTCCTGCCACTG                         CTTCCCAAGCTGCTGTCGCCAACTGGGGAGCTCTTCATGGTCACGGTGACG
genomic: GGGCGGGCGGCTGGAAGGGCCGCCGTGTCATAGACAGGGTCCTGCCACTGgtgggtgcag ... ctgcttgcagCTTCCCAAGCTGCTGTCGCCAACTGGGGAGCTCTTCATGGTCACGGTGACG
EST: gi|23363119|gb|BU650939.1|BU650939
EST:     GGGCGGGCGGCTGGAAGGGCCGCCGTGTCATAGACAGGGTCCTGCCACTG                         CTTCCCAAGCTGCTGTCGCCAACTGGGGAGCTCTTCATGGTCACGGTGACG
genomic: GGGCGGGCGGCTGGAAGGGCCGCCGTGTCATAGACAGGGTCCTGCCACTGgtgggtgcag ... ctgcttgcagCTTCCCAAGCTGCTGTCGCCAACTGGGGAGCTCTTCATGGTCACGGTGACG
EST: gi|22073161|gb|BQ822499.1|BQ822499
EST:     GGGCGGGCGGCTGGAAGGGCCGCCGTGTCATAGACAGGGTCCTGCCACTG                         CTTCCCAAGCTGCTGTCGCCAACTGGGGAGCTCTTCATGGTCACGGTGACG
genomic: GGGCGGGCGGCTGGAAGGGCCGCCGTGTCATAGACAGGGTCCTGCCACTGgtgggtgcag ... ctgcttgcagCTTCCCAAGCTGCTGTCGCCAACTGGGGAGCTCTTCATGGTCACGGTGACG
EST: gi|23363323|gb|BU651143.1|BU651143
EST:     GGGCGGGCGGCTGGAAGGGCCGCCGTGTCATAGACAGGGTCCTGCCACTG                         CTTCCCAAGCTGCTGTCGCCAACTGGGGAGCTCTTCATGGTCACGGTGACG
genomic: GGGCGGGCGGCTGGAAGGGCCGCCGTGTCATAGACAGGGTCCTGCCACTGgtgggtgcag ... ctgcttgcagCTTCCCAAGCTGCTGTCGCCAACTGGGGAGCTCTTCATGGTCACGGTGACG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cagattgcacatctctacgctgcgcttgcgttcacttattactccctgcttgcagCTTCCCAAGCTGCTGTCGCCAACTGGGGAGCTCTTCATGGTCACGGTGACGGAGAATGAGCCCAAGG
                                         ctccctgctt  CT-rich tract
                                 acttatta  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtgggtgcagggctgcacgcacttgattgggtgtgggcatggcgtggggatttaccccaagcggagcaacatcaaccagattgcacatctctacgctgcgcttgcgttcacttattactccctgcttgcagCTTCCCAAGCTGCTGTCGCCAACTGGGGAGCTCTTCATGGTCACGGTGACGGAGAATGAGCCCAAGG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGAA