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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCTACGGCAGCTGTCCTTGCCGGTGCGGGCGCAGCTGCTGGCCATTGACCACAGCCCCGCAGCCGCGGAGGCCACTGCACAGACGCTGCATTCCCACCAGgtgaggaggaggagcagccgcaccactggcaggcgtatgaatgagccgcaccactggcagcgatgatactgcgcgtcctgcgcgtgtgactgttactatttgctgtgctgcgaatgcactgcgcctcccactgcag

Basic information

species Chlamydomonas reinhardtii
transcript EDP09845
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|14232085|gb|BG850901.1|BG850901
EST:     ACAGCCCCGCAGCCGCGGAGGCCACTGCACAGACGCTGCATTCCCACCAG                         GTGGGGGATGTGGAGGTGGTGATAGCAAGCCTCTTCGGGCCGCTGCTGGAC
genomic: ACAGCCCCGCAGCCGCGGAGGCCACTGCACAGACGCTGCATTCCCACCAGgtgaggagga ... cccactgcagGTGGGGGATGTGGAGGTGGTGATAGCAAGCCTCTTCGGGCCGCTGCTGGAC
EST: gi|23363119|gb|BU650939.1|BU650939
EST:     ACAGCCCCGCAGCCGCGGAGGCCACTGCACAGACGCTGCATTCCCACCAG                         GTGGGGGATGTGGAGGTGGTGATAGCAAGCCTCTTCGGGCCGCTGCTGGAC
genomic: ACAGCCCCGCAGCCGCGGAGGCCACTGCACAGACGCTGCATTCCCACCAGgtgaggagga ... cccactgcagGTGGGGGATGTGGAGGTGGTGATAGCAAGCCTCTTCGGGCCGCTGCTGGAC
EST: gi|15703546|gb|BI727851.1|BI727851
EST:     ACAGCCCCGCAGCCGCGGAGGCCACTGCACAGACGCTGCATTCCCACCAG                         GTGGGGGATGTGGAGGTGGTGATAGCAAGCCTCTTCGGGCCGCTGCTGGAC
genomic: ACAGCCCCGCAGCCGCGGAGGCCACTGCACAGACGCTGCATTCCCACCAGgtgaggagga ... cccactgcagGTGGGGGATGTGGAGGTGGTGATAGCAAGCCTCTTCGGGCCGCTGCTGGAC
EST: gi|22073161|gb|BQ822499.1|BQ822499
EST:     ACAGCCCCGCAGCCGCGGAGGCCACTGCACAGACGCTGCATTCCCACCAG                         GTGGGGGATGTGGAGGTGGTGATAGCAAGCCTCTTCGGGCCGCTGCTGGAC
genomic: ACAGCCCCGCAGCCGCGGAGGCCACTGCACAGACGCTGCATTCCCACCAGgtgaggagga ... cccactgcagGTGGGGGATGTGGAGGTGGTGATAGCAAGCCTCTTCGGGCCGCTGCTGGAC
EST: gi|23363323|gb|BU651143.1|BU651143
EST:     ACAGCCCCGCAGCCGCGGAGGCCACTGCACAGACGCTGCATTCCCACCAG                         GTGGGGGATGTGGAGGTGGTGATAGCAAGCCTCTTCGGGCCGCTGCTGGAC
genomic: ACAGCCCCGCAGCCGCGGAGGCCACTGCACAGACGCTGCATTCCCACCAGgtgaggagga ... cccactgcagGTGGGGGATGTGGAGGTGGTGATAGCAAGCCTCTTCGGGCCGCTGCTGGAC