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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AACATGGAGAACGTGGTGAACGACAACGACAACATCAAGCAAGACATGTCCATTGACGTGTACGGCCGCAAGAAGGCCGACGACTACGCCGCCAAACAGgtacgcgtacgatggggtgcggggcggagcagagcgtgcagattgacggcctggtacattactacatgtacagaagggatctgtgttgtgccaagccatacccttacgcacgtgcatgtgtgtggcctggtggcccgatcacag

Basic information

species Chlamydomonas reinhardtii
transcript EDP09628
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|14227543|gb|BG846359.1|BG846359
EST:     CCATTGACGTGTACGGCCGCAAGAAGGCCGACGACTACGCCGACAAACAG                         GCCGGCCGACAGCGCATCCAAGGCCGGCGGTATACCGCGGTCGGAAGGACA
genomic: CCATTGACGTGTACGGCCGCAAGAAGGCCGACGACTACGCCGCCAAACAGgtacgcgtac ... ccgatcacagGCCG-CCGACAGCGCAGCCAAGGC-GGCGG-AGAGCGCGGT-GGA-GGACA
EST: gi|161810931|gb|FC099684.1|FC099684
EST:     CCATTGACGTGTACGGCCGCAAGAAGGCCGACGACTACGCCGCCAAACAG                         GCCGCCGACAGCGC
genomic: CCATTGACGTGTACGGCCGCAAGAAGGCCGACGACTACGCCGCCAAACAGgtacgcgtac ... ccgatcacagGCCGCCGACAGCGC
EST: gi|161802502|gb|FC091026.1|FC091026
EST:     CCATTGACGTGTACGGCCGCAAGAAGGCCGACGACTACGCCGCCAAACAG                         GCCGCCGACAGCGC
genomic: CCATTGACGTGTACGGCCGCAAGAAGGCCGACGACTACGCCGCCAAACAGgtacgcgtac ... ccgatcacagGCCGCCGACAGCGC
EST: gi|161815581|gb|FC101800.1|FC101800
EST:     CCATTGACGTGTACGGCCGCAAGAAGGCCGACGACTACGCCGCCAAACAG                         GCCGCCGACAGCGCAG
genomic: CCATTGACGTGTACGGCCGCAAGAAGGCCGACGACTACGCCGCCAAACAGgtacgcgtac ... ccgatcacagGCCGCCGACAGCGCAG
EST: gi|161790768|gb|FC079471.1|FC079471
EST:     CCATTGACGTGTACGGCCGCAAGAAGGCCGACGACTACGCCGCCAAACAG                         GCCGCCGACAGCGCA
genomic: CCATTGACGTGTACGGCCGCAAGAAGGCCGACGACTACGCCGCCAAACAGgtacgcgtac ... ccgatcacagGCCGCCGACAGCGCA
EST: gi|161797004|gb|FC087091.1|FC087091
EST:     CCATTGACGTGTACGGCCGCAAGAAGGCCGACGACTACGCCGCCAAACAG                         GCCGCCGACAGCGC
genomic: CCATTGACGTGTACGGCCGCAAGAAGGCCGACGACTACGCCGCCAAACAGgtacgcgtac ... ccgatcacagGCCGCCGACAGCGC
EST: gi|161802748|gb|FC092455.1|FC092455
EST:     CCATTGACGTGTACGGCCGCAAGAAGGCCGACGACTACGCCGCCAAACAG                         GCCGCCGACAGCGC
genomic: CCATTGACGTGTACGGCCGCAAGAAGGCCGACGACTACGCCGCCAAACAGgtacgcgtac ... ccgatcacagGCCGCCGACAGCGC
EST: gi|23362806|gb|BU650626.1|BU650626
EST:     CCATTGACGTGTACGGCCGCAAGAAGGCCGACGACTACGCCGCCAAACAG                         GCCGNCGACAGCGC
genomic: CCATTGACGTGTACGGCCGCAAGAAGGCCGACGACTACGCCGCCAAACAGgtacgcgtac ... ccgatcacagGCCGCCGACAGCGC
EST: gi|161794759|gb|FC077357.1|FC077357
EST:     CCATTGACGTGTACGGCCGCAAGAAGGCCGACGACTACGCCGCCAAACAG                         GCCGCCGACAGCGCA
genomic: CCATTGACGTGTACGGCCGCAAGAAGGCCGACGACTACGCCGCCAAACAGgtacgcgtac ... ccgatcacagGCCGCCGACAGCGCA
EST: gi|161812718|gb|FC094270.1|FC094270
EST:     CCATTGACGTGTACGGCCGCAAGAAGGCCGACGACTACGCCGCCNAACAG                         GCCGCCGACAGCGC
genomic: CCATTGACGTGTACGGCCGCAAGAAGGCCGACGACTACGCCGCCAAACAGgtacgcgtac ... ccgatcacagGCCGCCGACAGCGC
EST: gi|161797930|gb|FC087419.1|FC087419
EST:     CCATTGACGTGTACGGCCGCAAGAAGGCCGACGACTACGCCGCCNAACAG                         GCCGCCGACAGCGCAG
genomic: CCATTGACGTGTACGGCCGCAAGAAGGCCGACGACTACGCCGCCAAACAGgtacgcgtac ... ccgatcacagGCCGCCGACAGCGCAG
EST: gi|161801979|gb|FC088800.1|FC088800
EST:     CCATTGACGTGTACGGCCGCAAGAAGGCCGACGACTACGCCGCCNAACAG                         GCCGCCGACAGCGC
genomic: CCATTGACGTGTACGGCCGCAAGAAGGCCGACGACTACGCCGCCAAACAGgtacgcgtac ... ccgatcacagGCCGCCGACAGCGC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AACATGGAGAACGTGGTGAACGACAACGACAACATCAAGCAAGACATGTCCATTGACGTGTACGGCCGCAAGAAGGCCGACGACTACGCCGCCAAACAGgtacgcgtacgatggggtgcggggcggagcagagcgtgcagattgacggcctggtacattactacatgtacagaagggatctgtgttgtgccaagccatacccttacgcacgtgcatgtgtgtggcctggtggcccgatcacag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAG